Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1919 ATGTCATTCACAGGAACTCTTGATAAATGCACTGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGCATACCATACCATAAAAATTGCTTCAAATGCAGTCACTGCAAGGGAACCCTTACGATGAGCACATACTCCTCAATGGATGGAGTTCTATATTGCAGGACACATTTTGAACAGCTTTTCAAGGAATCTGGAAACTTCAGCAAGAACTTCCAAACAGGTAAGATGAATACCATCTTTTGTCCTCCAATCTCTTTTTGTTTCATTAATTCAACCTCACGAAGAATAAAAAGAGCAATGCAACATGTTACATTGACCCCGAGTAGACTCTCTTCCATGTTCAGTGGAACCTTAGACAAATGCTCGGTTTGCTCAAAAACTGTCTATCCACTGGAAAAGGTGACACTGGAAGGGGAATGCTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCCTCCTATGCTGCTCTAGATGGAGTCCTCTACTGCAGGCACCACTTTGCACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGAATGGTTCTTCCCCACCTCCTGAAGTAGTTGATGAGCCACCACAGCCAGAACCTGAAGCAGACCAGGACAATCCAGAATCATCTGAGGAGAAGAAACAAGAGGACACACCTCTTGAATGA 717 0.4393 MSFTGTLDKCTACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGTLTMSTYSSMDGVLYCRTHFEQLFKESGNFSKNFQTGKMNTIFCPPISFCFINSTSRRIKRAMQHVTLTPSRLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECYHKNCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYSHVLQAAAHKRNGSSPPPEVVDEPPQPEPEADQDNPESSEEKKQEDTPLE* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1919 238 PANTHER OS06G0237300 PROTEIN 1 229 IPR045268 GO:0051015
Dod07g1919 238 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Dod07g1919 238 MobiDBLite consensus disorder prediction 196 238 - -
Dod07g1919 238 Gene3D Cysteine Rich Protein 5 72 - -
Dod07g1919 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 191 - -
Dod07g1919 238 Gene3D Cysteine Rich Protein 122 190 - -
Dod07g1919 238 SMART lim_4 9 61 IPR001781 -
Dod07g1919 238 SMART lim_4 125 177 IPR001781 -
Dod07g1919 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Dod07g1919 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 151 - -
Dod07g1919 238 Pfam LIM domain 10 65 IPR001781 -
Dod07g1919 238 Pfam LIM domain 126 181 IPR001781 -
Dod07g1919 238 MobiDBLite consensus disorder prediction 224 238 - -
Dod07g1919 238 ProSiteProfiles LIM domain profile. 124 184 IPR001781 -
Dod07g1919 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Dod07g1919 238 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 229 - -
Dod07g1919 238 CDD LIM1_SF3 6 68 - -
Dod07g1919 238 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1919 Dod-Chr7 49680381 49682247 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dod07g1919 LIM 1.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1919 - K09377 gmx:100305845 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1919 07 49680381 49682247 Dod07g1919 07 49680381 49682247 ECH