Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1912 ATGGAAGAAGCAGCAACAGCAGCACCTCGCCAGAGAAAGCCAAAGAGGAAGCACGCCGCGGCGTTGGAGAGTGAACTTGAGCTCGAGCGAGTCAACTCGCTGCCGTGGAATCCTTCCCTTCCACAGCGCGACCACGACGATGACTACGGCGGCAATGACCCCTTCGCTATGCTCGCGAACGGCTCGAGCGAGCTCGAAGGAGGTTTCCTCTCTCTCGAGGAGATCGACGAAGCCGATTACGGCTTGGTCATTCCCAAAGCAGAGAAAAATGAGGAGAGGAAGAAGAACAAGAAGAAGAAGAGTGAGCGCGATGCGAATGTGAAGGAAGAGGAGAAGGAAGAAGAAGAAGAAGACGGAGGTGGTGGTGACGATGAGGTTGAAGCGAAGAAAAAGATGAAGAAGAAGAAGAAGGATAAGAAGAAAAAGAAGAAGAAGAAGAAAACGAAGGAGGAAAGCGAAGGGGATACAGAGAACCAGGATGTTGAGAAAGAAGATGCTGGTCTAGATACTAATGTGAAGGATGCTGATGGTGGTGGGGAAGATGATGTTGATGAAACTGAATTTTATGGGTGGAATGAGTTGAGGCTTCATCCTATGATAATGAAGGCAATTTACAAGCTTGGCTTCAAGGAACCAACACCAATACAGAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCTGAGACTGGATCTGGTAAAACACTTGCGTTTGGTTTACCCATTTTGCAACGTATTTTGGAGGAACGAGAGAAGGCTACAAAAATGGTTGAAGAAAGGGATGAAGAGCCAGAAAAGTATGCTCCTACAGGCATTTTGAGGGCTCTAATTATTGCACCAACTAGAGAGCTTGCTCTTCAGGTCGCTGATCATCTAAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGGGGGATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAGGCCTGAGATTGTTGTTGGGACTCCAGGGAGGTTATGGGAACTCATGTCAGGTGGAGAAAAGCATCTAGTCGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTGCAAAACGGTCATTTCAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAATATCTCCACTGAAGATAATTCTCAATATGCACAAAATTGTGTTACTGTTTCAAGCTACCAAAGAAAGAAGAGACAAACTCTCGTGTTTTCAGCAACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTAAAGCGTGGTTTAATGAAACAAAAGCAATCATTGACCGATGGATTGAGTTCTATTGAAACTCTTTCTGAACGAGCTGGAATGAGATCAAATGCTGCGATTATTGATCTTACCAATCCATCGATTTTAGCAGCTAAGCTTGAGGAATCATTTATTGAGTGCAGGGAAGAAGATAAAGATGCCTATTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACAATAGTTTTCTGTACGTCAATTGCAGCTTTGCGTCATATTTCTTCCATACTGCGGATTCTTGGTGTTAATGTTTGGACTCTTCATGCCCAAATGCAGCAGCGGGCGCGTTTAAAGGCCATTGATCGTTTTCGTGAAAATGAAAATGGTATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTGGGACTGTTGTCCACTATCAGCTTCCACATTCAGCTGAGGTTTATGTTCATAGAAGCGGAAGAACAGCTAGAGCTTCTGCCGAAGGTTGTAGTATTGCTTTAATCTCACCAAGAGATACAGCAAAGTTTGCTTCATTGTGCAAATCATTTTCTAAGGATACTTTTCAGCGGTTTCCTTTAGAGAATTCATACGTGCCAGAGGTTCTAAAACGATTGTCTCTTGCGCGTCAAATAGACAAGATAACACGGAAGGATTCACAGGAGAAAGCTGAGAAAAGCTGGTTTGATCGGAATGCTAACTCAGTGGAATTAGTTACTGAGAATTATGACAGTGAGGAGGATCAAGTGAGCAAATACAAGCAAATGAAAGCCAGCTCTAAACAATTGAAGAAATTGCAGCAGGAGCTCAGTACACTGATTTCGCGTCCTTTACAATCAAAATCATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAACAACTGCAACAATTAGCAAGGCAAAAACTAAGCGATCAGCAGGGTTCAGGAGTAGGCAAAAAGGGAAAATTGGTCGTGATTGGTCAAGATTGTGTGGAGGCACTTCAAGCACTGCGGAGTGCTGGTGAAGAGGTGCGCATGGACGTCAAGGATTTGGCTGGAAAACAGAGAAACATGGAAAATTTGAAAAGAAAAAGGAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGGAGAAAGCAGAAGAGAAAGCTGAAACATGGGGAAGAATAG 2475 0.4384 MEEAATAAPRQRKPKRKHAAALESELELERVNSLPWNPSLPQRDHDDDYGGNDPFAMLANGSSELEGGFLSLEEIDEADYGLVIPKAEKNEERKKNKKKKSERDANVKEEEKEEEEEDGGGGDDEVEAKKKMKKKKKDKKKKKKKKKTKEESEGDTENQDVEKEDAGLDTNVKDADGGGEDDVDETEFYGWNELRLHPMIMKAIYKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRILEEREKATKMVEERDEEPEKYAPTGILRALIIAPTRELALQVADHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISTEDNSQYAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLMKQKQSLTDGLSSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVGTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTAKFASLCKSFSKDTFQRFPLENSYVPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNANSVELVTENYDSEEDQVSKYKQMKASSKQLKKLQQELSTLISRPLQSKSFSHRYLAGAGVTPLMQEQLQQLARQKLSDQQGSGVGKKGKLVVIGQDCVEALQALRSAGEEVRMDVKDLAGKQRNMENLKRKRKEEKKRLRDQRRKQKRKLKHGEE* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1912 824 SMART helicmild6 515 596 IPR001650 -
Dod07g1912 824 MobiDBLite consensus disorder prediction 80 108 - -
Dod07g1912 824 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 189 217 IPR014014 GO:0003724
Dod07g1912 824 Pfam Helicase conserved C-terminal domain 487 595 IPR001650 -
Dod07g1912 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 475 636 IPR001650 -
Dod07g1912 824 Coils Coil 787 824 - -
Dod07g1912 824 MobiDBLite consensus disorder prediction 132 147 - -
Dod07g1912 824 Coils Coil 125 153 - -
Dod07g1912 824 Coils Coil 249 269 - -
Dod07g1912 824 SMART ultradead3 208 451 IPR014001 -
Dod07g1912 824 MobiDBLite consensus disorder prediction 784 824 - -
Dod07g1912 824 Pfam DEAD/DEAH box helicase 213 421 IPR011545 GO:0003676|GO:0005524
Dod07g1912 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 384 IPR027417 -
Dod07g1912 824 Coils Coil 84 118 - -
Dod07g1912 824 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 360 368 IPR000629 -
Dod07g1912 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 611 IPR027417 -
Dod07g1912 824 CDD SF2_C_DEAD 476 605 - -
Dod07g1912 824 Coils Coil 672 712 - -
Dod07g1912 824 MobiDBLite consensus disorder prediction 148 177 - -
Dod07g1912 824 MobiDBLite consensus disorder prediction 1 60 - -
Dod07g1912 824 PANTHER RNA HELICASE 87 744 - -
Dod07g1912 824 Gene3D - 473 717 IPR027417 -
Dod07g1912 824 Gene3D - 123 440 IPR027417 -
Dod07g1912 824 MobiDBLite consensus disorder prediction 784 801 - -
Dod07g1912 824 CDD DEADc_DDX24 200 465 - -
Dod07g1912 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 438 IPR014001 -
Dod07g1912 824 MobiDBLite consensus disorder prediction 80 184 - -
Dod07g1912 824 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 87 744 - -
Dod07g1912 824 MobiDBLite consensus disorder prediction 802 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1912 Dod-Chr7 49568773 49577140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1912 190 606 Eukaryotic Initiation Factors Gene Family AT5G11200 28.539 4.99e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1912 K14805 - gmx:100806018 1205.66