Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1906 ATGGTTCTTGCCAAAATTCCTAAGCCCAACCAAGGAGGCTTGGTCTGTTTGAACCATGGAGGAGTTATTGGTCTCTTTGCCACTGATTTGCTGAAAGTCAACACTGTTGCCATTGCCACTAATGATGCTAGCTGCTCAGTGGCAAAGTTGAGAGTTATCGAGGGAATGTTCCAATTTGTCCCGTTTTATGTTAGCCACACCTTGGAGGTTTGGTTGGAAACTAGGAATAACTTGTTGAAAATGGATTTGGCTCAGAACCGATATTTTGAGGATAAAGCTTTCATTGGATACTTAAAGTATCTTCAGTATTGGCAACGCCTGGAATACATTAAATTTATTATGTATCCACATCGTCTTTATTTTCTCGAGCTTCTTCAGAATGCAAATTTTCGCATTGCAATGGCACATCCCAACAATAAGGAACTGGCCCACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTGCCTAGATCACTTTCTGAACCTAGTGCCACATCTGCACCTCCTGCTGCCTCAGCTGCTACTCCGACTCAGCCACCTGTGCCTGCACTGCCGCCAGTGCCCGCCACAAATGTTTCTGTGACGGCATCATCCACTCAAGCTCTTTCTCCATTGCCGTATGGTATGCCCTCTGGATCTGCTCTTGCGAAAAATGACATGAGGAATCCTTCATTTGATAGAAGGAAGAGAAAGTGA 720 0.4389 MVLAKIPKPNQGGLVCLNHGGVIGLFATDLLKVNTVAIATNDASCSVAKLRVIEGMFQFVPFYVSHTLEVWLETRNNLLKMDLAQNRYFEDKAFIGYLKYLQYWQRLEYIKFIMYPHRLYFLELLQNANFRIAMAHPNNKELAHRQQFYFWKNYRNNRLKHILPRSLSEPSATSAPPAASAATPTQPPVPALPPVPATNVSVTASSTQALSPLPYGMPSGSALAKNDMRNPSFDRRKRK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1906 239 Pfam SOH1 82 154 IPR008831 GO:0003712|GO:0006355|GO:0016592
Dod07g1906 239 MobiDBLite consensus disorder prediction 167 239 - -
Dod07g1906 239 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 82 197 IPR008831 GO:0003712|GO:0006355|GO:0016592
Dod07g1906 239 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 60 151 IPR038089 -
Dod07g1906 239 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 82 197 - -
Dod07g1906 239 MobiDBLite consensus disorder prediction 198 214 - -
Dod07g1906 239 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1906 Dod-Chr7 49521093 49525336 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Dod07g1906 Med31 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1906 K15153 - gmx:100527879 238.81