Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1871 ATGAAGCCCGTGTTTTGCGGAAACCTTGATTTCGACGCGCGACAATCAGATGTTGAAAGGCTCTTCAGAAGATACGGGAAGGTTGATAGAGTGGACATGAAATCCGGGTTTGCTTTCGTCTACATGGAAGACGACCGTGATGCTGAATATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGGAAGGGGCGACGGATACGTGTTGAGTGGACCAAGCAAGAACGAGATAGTAGAAGGGCAGGTGATTCAAGAAAATCCTCAACTAATTCAAGACCATCAAAGACTTTGTTTGTCATAAATTTTGATCCAGTTCATACCAGGACAAGAGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCGAATATAAGGATCAGAAGGAATTTTGCTTTTATCCAGTATGAAACCCAGGAGGATGCTACTAGGCCTTGGAGGCAACTAACTTGA 453 0.4305 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDDRDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRAGDSRKSSTNSRPSKTLFVINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYETQEDATRPWRQLT* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1871 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 144 IPR000504 GO:0003723
Dod07g1871 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Dod07g1871 150 MobiDBLite consensus disorder prediction 73 93 - -
Dod07g1871 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 150 IPR000504 GO:0003723
Dod07g1871 150 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 144 - -
Dod07g1871 150 PANTHER - 4 144 - -
Dod07g1871 150 SUPERFAMILY RNA-binding domain, RBD 4 146 IPR035979 GO:0003676
Dod07g1871 150 Gene3D - 86 149 IPR012677 -
Dod07g1871 150 Gene3D - 1 85 IPR012677 -
Dod07g1871 150 SMART rrm1_1 3 70 IPR000504 GO:0003723
Dod07g1871 150 SMART rrm1_1 96 150 IPR000504 GO:0003723
Dod07g1871 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1871 Dod-Chr7 48454576 48456843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1871 4 144 Eukaryotic Initiation Factors Gene Family AT1G49760 25.316 7.48e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1871 K12893 - gmx:100815452 276.559