Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1868 ATGATGGGTGGTTCAAGTACCAACTTGGTGACTACAGTCATTGGCTTTGGATTGAGTGCAACTTTCATTGTGTTTGTGTGCACAAGAATAATTTGTGGAAGACTACAAAGGCATGTAGCATCAAGGACTATATTTGAGATTGATTCAAGAGCAGATATAGAACAGCCAGAACATCATATTAATGGCCCTGAACCCGCTCTTCTTGCTGCAATCCCCACTTTGAAGTTCGACCAAGAGGCCTTCAGCTCCATTGAATATACACAGTGTGTGATATGCTTGGCTGATTACAAGGACCAAGAATTATTGCGCATCATACCTAAATGTGGGCACAGTTTCCATCTCTCTTGCATTGATATGTGGCTGAGGAAACAGTCCACATGTCCTGTATGCCGTTTGCCTCTACAAAATGCTCTTGAAACAAAACATGTGAGAACTTTGACATTCACCATCAACCCATCTCTTGATGAGTCTATTACTTCAGAAAGGAACACAGTTGAAGAGAGGCCAGCTGAGTCTAATGCTAGTAGCAACTCCTTACAACCAACTTCCGGAGAACCAGAAGCAAGACAGTGA 573 0.4258 MMGGSSTNLVTTVIGFGLSATFIVFVCTRIICGRLQRHVASRTIFEIDSRADIEQPEHHINGPEPALLAAIPTLKFDQEAFSSIEYTQCVICLADYKDQELLRIIPKCGHSFHLSCIDMWLRKQSTCPVCRLPLQNALETKHVRTLTFTINPSLDESITSERNTVEERPAESNASSNSLQPTSGEPEARQ* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1868 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Dod07g1868 190 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Dod07g1868 190 CDD RING-H2_EL5_like 88 131 - -
Dod07g1868 190 SMART ring_2 89 130 IPR001841 -
Dod07g1868 190 MobiDBLite consensus disorder prediction 157 190 - -
Dod07g1868 190 Pfam Ring finger domain 88 131 IPR001841 -
Dod07g1868 190 SUPERFAMILY RING/U-box 88 141 - -
Dod07g1868 190 MobiDBLite consensus disorder prediction 169 190 - -
Dod07g1868 190 PANTHER OS11G0150450 PROTEIN 2 175 - -
Dod07g1868 190 PANTHER OS02G0676500 PROTEIN 2 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1868 Dod-Chr7 48430797 48433925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1868 53 137 C3H Transcription Factor Family AT4G33565 37.931 1.05e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1868 - - ccaj:109802319 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1868 07 48430797 48433925 Dod07g1868 07 48430797 48433925 ECH