LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1851	ATGGTGAGAGGAAAGACTCAGATGAAGCGCATAGAGAATGCCACAAGCAGGCAAGTGACCTTCTCAAAGAGGCGCAATGGGTTGCTGAAGAAGGCCTTTGAGCTTTCAGTTCTGTGTGATGCTGAGGTAGCTCTTATCATATTCTCTCCAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAAACAATTGAAAGATATCGCAGGCATGCCAGGGACACTTCAACAGCAGCACCCAAAACAGTTGAACAGAATGTGCAGAATATGAAGCAAGAAGCAGCAAGCATGATGAAGAAGATTGACATTCTTGAAGCCTCTAAAAGGAAACTCTTGGGAGAAGGTTTGGGGTCATGCTCCATTGATGAACTGCAAAAGATAGAACAACAGTTGGAAAGGAGTATAAGCAATGTTCGAGCAAGAAAAGCTCAGGTTTTCAAGGAACAAATTGAGCAACTAAGGGAAAAGGAAAAAGCCCTAGTTGCTGAAAATACCAGGCTCTCTGAGAAGTGTGGTATCCTTCCACGGCCAGCAACAAAGGATCAGAGAGAGAACCAACCTCAACCCTATGCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGGCTTCCTGAAACAAGAATAAGGCGCATCTCTCCCACTAAGGTTTAG	669	0.4439	MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHARDTSTAAPKTVEQNVQNMKQEAASMMKKIDILEASKRKLLGEGLGSCSIDELQKIEQQLERSISNVRARKAQVFKEQIEQLREKEKALVAENTRLSEKCGILPRPATKDQRENQPQPYAESSSPSSDVETELFIGLPETRIRRISPTKV*	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g1851	222	MobiDBLite	consensus disorder prediction	175	205	-	-
	Dod07g1851	222	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	SUPERFAMILY	SRF-like	3	75	IPR036879	GO:0003677\|GO:0046983
	Dod07g1851	222	PANTHER	MADS BOX PROTEIN	1	211	-	-
	Dod07g1851	222	Coils	Coil	88	108	-	-
	Dod07g1851	222	Coils	Coil	122	171	-	-
	Dod07g1851	222	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	PANTHER	MADS-BOX PROTEIN SOC1	1	211	-	-
	Dod07g1851	222	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	CDD	MADS_MEF2_like	3	75	IPR033896	GO:0000977\|GO:0045944
	Dod07g1851	222	MobiDBLite	consensus disorder prediction	182	202	-	-
	Dod07g1851	222	Gene3D	-	14	105	IPR036879	GO:0003677\|GO:0046983
	Dod07g1851	222	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Dod07g1851	222	Pfam	K-box region	85	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod07g1851	222	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g1851	Dod-Chr7	48188014	48210927	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod07g1851	1	159	MADS-box Gene Family	AT2G45660	76.730	1.55e-86	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Dod07g1851		K-box	6.5e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1851	-		-	gmx:100807963	325.094

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod07g1851	07	48188014	48210927	Dod07g1851	07	48188014	48210927	ECH