Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1728 ATGATAGCTTCTCGCTTGCTAGTGATATTTTTTGTTCCGTTCTTACTTTCCTCCTTTGTTTCTTGTTATTCATGGAATGACATCAAACTCTGGTGTAGCCAAACCCCCAACCCTCAACCATGTGAGTATTTCTTGAGCAATAACCCTGATCACTTGCACAGACCCATCAAGCAAAAATCCGATTTCTTCAAGCTTTCGCTGCAACTTGCTCAAGAGAGAGCTCTCATTGGCCATACAAACACACTTTCATTAGGCTCAAAGTGCCGCAACCCACTTGAAACTGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACCATCAAAAAGCTCAACAAAACCTTAGACCCTAACACCAAGTGCACCCAAGTTGATACCCAAACATGGCTCAGCACAGCTCTCACCAACCTCGAGACATGCAAAGCTGGGTTCTATGAACTTGGGGTGCAAGACTATGTGCTACCTCTAATGTCTAACAATGTTACCAAGTTACTAAGCAACACTTTGGCTCTCAACAAGGTTCAATATCAAGAACCAAGTTACAAAGATGGGTTCCCAACATGGGTCAAACCCGGTGATAGAAAGTTGTTGCAAGCATCTTCTCCGGCTTCTAGAGCTAATGTAGTGGTGGCTAAAGATGGTTCTGGAAAGTACACTACGCTAAGTGCTGCCATAAATGCTGTACCAAAGAATAGCAAGGGAAGATATGTGATACACGTGAAGGCAGGGATATACAATGAGCAAGTTGAGATAAAGGCCAAGAATATCATGTTGGTAGGAGATGGTATTGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCAGCTACTGTTGCTGTTGTTGGGGATGGATTCATTGCTCAAGACATCACATTTAGGAACACTGCTGGTGCAAAAAACCATCAAGCTGTTGCACTGCGTTCTGGATCAGACTTATCAGTATTTCACAGATGCAGCTTTGAAGGTTATCAAGACACATTATACGTTCACTCTGAGAGACAATTCTACAGAGAATGCAACATCTATGGCACTGTTGACTTCATATTTGGTAATGCTGGTGTGGTGTTCCAAAATTGCAACATATTTGCTAGGAACCCTCCAAACAAGGTCAACACAATCACAGCACAAGGAAGAACAGACCCAAACCAAAACACTGGAATTTCCATTCACAATTCTAAGGTTACAGCTGCCTCAGATTTGAGACCAGTTCAAAGCTCAGTTAGGACTTATCTTGGAAGACCTTGGAAGCAATATTCTAGGACAGTGTTCATGAAAACTTCACTTGATAGTTTGATTAACCCTGCAGGTTGGTTGGAATGGGATGGTAACTTTGCTTTGAGTACCCTTTATTATGGAGAGTACATGAACACAGGTCCTGGTTCTTCCACTGCAAGAAGGGTTAAATGGAGAGGTTATCATGTCATCACGAGTGCTTCTGAAGCATCCAAATTCACAGTTGCAAATTTCATTGCCGGGAATTCATGGTTACCAGCCACCAAAGTGCCTTTCACCTCTGCTCTCTAA 1548 0.4289 MIASRLLVIFFVPFLLSSFVSCYSWNDIKLWCSQTPNPQPCEYFLSNNPDHLHRPIKQKSDFFKLSLQLAQERALIGHTNTLSLGSKCRNPLETAAWADCVELYEQTIKKLNKTLDPNTKCTQVDTQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTLSAAINAVPKNSKGRYVIHVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAKNHQAVALRSGSDLSVFHRCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAGVVFQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNSKVTAASDLRPVQSSVRTYLGRPWKQYSRTVFMKTSLDSLINPAGWLEWDGNFALSTLYYGEYMNTGPGSSTARRVKWRGYHVITSASEASKFTVANFIAGNSWLPATKVPFTSAL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1728 515 SUPERFAMILY Pectin lyase-like 201 512 IPR011050 -
Dod07g1728 515 PANTHER PECTINESTERASE 6 514 - -
Dod07g1728 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Dod07g1728 515 Gene3D - 202 515 IPR012334 -
Dod07g1728 515 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Dod07g1728 515 PANTHER PECTINESTERASE 6 514 - -
Dod07g1728 515 SMART PMEI_2 23 171 IPR006501 GO:0004857
Dod07g1728 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Dod07g1728 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Dod07g1728 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 174 IPR035513 -
Dod07g1728 515 Pfam Plant invertase/pectin methylesterase inhibitor 27 171 IPR006501 GO:0004857
Dod07g1728 515 CDD PMEI-like_3 30 173 - -
Dod07g1728 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Dod07g1728 515 Pfam Pectinesterase 207 501 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1728 Dod-Chr7 45919795 45921467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1728 1 515 Carbohydrate Esterase AT2G45220 67.761 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1728 K01051 - gmx:100783428 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1728 07 45919795 45921467 Dod07g1728 07 45919795 45921467 ECH