Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1718 ATGGCTTCAACCTTCGATTTCATCAAAGATCTAAACGTATCTAATGAAGCGAAGATCTGCAAGGTTAAAGCTAGAGTCATTAGATTATGGACAGTTCCAATTTTCAATGATCGACATGTAAAGCCCATTATTGAGATGCTGCTCATGGATGAAAAGACTGACAGGATTCAGTGTACCGTGAGAAGTCAACATGTTAAATTATTTGATAGCAAGTTCGTTGAGGGGGCAGCCTACATTATTAGCAACTTTGATCTTGCCTTGAATACAGCTAAGTACAAAGCAACCACCCATGATCTTCGAATTTTTCTTAACAAAGATACTCAAGTTACACAGGTTGATGATGCTGTCATACCAGTAAATGGTTTTCGCTTTCTACCAAACAACCTTATCCTTTCAGAGACTAAACAAGATTGTCATTTAGTTGATGTCATTGGGTTATTAACTGGAAAGGGAGAACTGCAGGATTATTCCAAGAAAGAAAAAATTTGTAGGAAAATTGTGATTGAGCTAGACGATATTGAGAGTAATGAAAAGATCTTATGTACACTCTGGGATGACTTTGCAACTCAATTTATTGAATACATGAAAGATCAACCTGCCATTGAGTATATCATAATTTTACAGCTTGCCAAATTCAATTTCTTCCAAGGAACCATGGGAGTGTCAAACACAAAGTATGCATCTAAGCTTCTCATCAATGCAGACTTACCAGAAGTTCGAGATTTTCAACTAAGGGCTACACAATTTCATGATGGAAATCTTCCACAAGTTTCACAACTGCAGGGTCAAGCTTTTTACTCAATAGAAGATGACTTCCTTAATCAATGCGTATACAAACCTATTAGTGATCTCAAGGAACCTGTTCAGGAAAAGTCAATTTTTGTCACAATTGGGACAGTTAAGAGTATTGAAAACGAATCAAACTGGTGGTATAAAGGATGCAAAAAGTGCTCTCAGGGTTTAAGAGAATTGACACAAACATTTTATTGCAAGAAATGCGATGTCAATTGCACAGCGTTCAGTCCCAGGTATAGTATCAAGTTAAGGGTTGTTGATGATACAACATCTGCTCTTTTCATGCTTTATGACCGTGAAGCAACACAATTTCTTAATATTTCTGCATCTGATCTGAGGTCAGCTTATCTTTCAAGGGGTGGAGACAAAAGTGAATACCCAACTGAGCTTAATGCATTCAAGGATAAACGATTTCTTTTCAAGGTTTCTGTGCGCCTTGAAGAAATAAACTCAATTCAGCCAAATGCCATATCTGTCATAAAACTCTGTTCTGATGACACAACATTATCTGCTTTTATATCCAAATTCAATATTTCTGATGTTGTGCATGCCCATGATGACTCTGATATTTTTAGCAATCTCCCAGATTTATCAGATATCAATAAGGAATCATATTCTCAGTATTTAGACAATGCATCGGACCTTCAGTCCTCATCATTAATCACTCCTTCAAAGTCCTTCTCTGATGAAGCATGGGTTGCAACACCTACTAAGTTCTCACTTGATGATGATGCAAACCTGTCATCAACTAAGACCAGGAAGATTGTCAAGAAGGAGCATGTTGATTGA 1584 0.3699 MASTFDFIKDLNVSNEAKICKVKARVIRLWTVPIFNDRHVKPIIEMLLMDEKTDRIQCTVRSQHVKLFDSKFVEGAAYIISNFDLALNTAKYKATTHDLRIFLNKDTQVTQVDDAVIPVNGFRFLPNNLILSETKQDCHLVDVIGLLTGKGELQDYSKKEKICRKIVIELDDIESNEKILCTLWDDFATQFIEYMKDQPAIEYIIILQLAKFNFFQGTMGVSNTKYASKLLINADLPEVRDFQLRATQFHDGNLPQVSQLQGQAFYSIEDDFLNQCVYKPISDLKEPVQEKSIFVTIGTVKSIENESNWWYKGCKKCSQGLRELTQTFYCKKCDVNCTAFSPRYSIKLRVVDDTTSALFMLYDREATQFLNISASDLRSAYLSRGGDKSEYPTELNAFKDKRFLFKVSVRLEEINSIQPNAISVIKLCSDDTTLSAFISKFNISDVVHAHDDSDIFSNLPDLSDINKESYSQYLDNASDLQSSSLITPSKSFSDEAWVATPTKFSLDDDANLSSTKTRKIVKKEHVD* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1718 527 Pfam Replication factor-A C terminal domain 294 427 IPR013955 -
Dod07g1718 527 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Dod07g1718 527 CDD RPA1_DBD_B_like 142 245 - -
Dod07g1718 527 Gene3D - 7 115 IPR012340 -
Dod07g1718 527 SUPERFAMILY Nucleic acid-binding proteins 281 430 IPR012340 -
Dod07g1718 527 Gene3D - 116 251 IPR012340 -
Dod07g1718 527 PANTHER REPLICATION FACTOR A 1, RFA1 19 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod07g1718 527 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 19 377 - -
Dod07g1718 527 SUPERFAMILY Nucleic acid-binding proteins 136 242 IPR012340 -
Dod07g1718 527 Pfam Domain of unknown function DUF223 45 134 IPR003871 -
Dod07g1718 527 CDD RPA1_DBD_A_like 21 109 - -
Dod07g1718 527 CDD RPA1_DBD_C 281 418 IPR013955 -
Dod07g1718 527 Gene3D - 273 438 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1718 Dod-Chr7 45598951 45601635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1718 22 424 Core DNA Replication Machinery Family AT5G08020 25.000 1.65e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1718 - - ahf:112707100 447.973