Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1696 ATGAATTATTCTGGCTACAATCAACAACAACAGCAGCAGCAGCAGCAGCAACAACCACAATATTCGTATGAATACGACCCATCTCAAATCCAAGCCTACGACCAATCCTATGCATACCAAACCTATTACGGTTACAATACCCAATACGCATATTACCCCGATGCACATCAAACCCACCTTCAATTCCAACCCGATTCCGCCCCGGTTCACCCTCCCGGCGTGAATCCTGCCGCACCTGAACCCGCTCCCCCGAGACCCGCGCACGCCCCGGCTGGGCCATCTCAATACAGAGGTAGAGGTGGCCGGGGTGGTAGATCGATTAGAGGGGGTGGTCGAGGCCAATTCAATCGGGGTAGGGGACGTGGGCTGGGTGGTGGTAGGCACTTCCCATCTCATTCTTCTGGAGCTTCCATTTCTAATGGAGCAGATGTGCCTGCTGCTGCTGAAGCCACTTTGGTGGTACAACCTTCATCATCCATCTCGGCGCAAGCACCATTACCCAAACAAGCTCAAGTGCCACCCGCACCAGTGCATCCACCACCGCCTAAGGCATGGTGTGAAATTTGTAACGTTGGGTGCAATACTTTTGAAGTCTTGGAACAGCATAAGAATGGAAAGAAACACAAGAAGAATGTGAAAGCACATGAACAATTACAGAGACAAAAAGCTATAAATGGACAACAGAATGAACAGATTCCTACTACTCAATTGAATGTAATAGATCAGCCTAAGAATGTTCAGGAATCTGAGAAAAATGGATGCCCCACAGAGAATATGGGCTGTGAAGTTGCAGCTGTTAATCACAAGGATGAAACAAAGCTGCAGAATAACATTGGAGAGACTTCTGCAGTGTCAGCTGAAGAGCCTGAGGGCCAAACCAGGGATAACCCTGCTGTAAGGGGCCATGGATTGAAGCGTAAGATGAGGGGAGGCAAAGTATCCAAACTCGCCAGGGCTGCTGATGGGTCAAGAAGGCCAGTGGAAACTCTAAAAGCTGAGCAGTTTATACCTTTCAAGTGCGAGTTGTGCAATGTTAAATGTGAGTCTGAGGTTGTTTACCAGAGTCATGTGACTGGGAAAAAGCACTTGTCAAATCTGAAGCGTGTCCATGGCCCACAGGCCTTGTCTGGACTACTAGGGCTTCAATCACTCTACCCACCTGCTGATATCAACACTCTGTCAAATGCAATTAACGCTCAAGTCCAACAAGGCGATAATGATCCGCAAGTGCTGTTGGCTCAGCTCCTGATGAATGTATTATCTCAAGCACAAGGACCTGTGGCAGCACCACCTGCAGGCCCTGTAGCTGCTCAGATGCTGGTAGCATCCACATCTGTGGATGGATCCAGTTATGAACCCCAGTTGCCTCAGACACAAGTGTCAGCAATCACAACAAATGTCGATACTCCGGCATCCATCAGTTACCAAGTTGCAGGCGAATCGAGCCAACAGGTGTTAGGACATCCCCAGGATGGTTCAGTTATGACATTGGCAGACAATCCAGGTGCAGCAACAGCAAATGACCAAATACCTTCAGCATGTGAAGCTCCAACCTCATAG 1560 0.4891 MNYSGYNQQQQQQQQQQQPQYSYEYDPSQIQAYDQSYAYQTYYGYNTQYAYYPDAHQTHLQFQPDSAPVHPPGVNPAAPEPAPPRPAHAPAGPSQYRGRGGRGGRSIRGGGRGQFNRGRGRGLGGGRHFPSHSSGASISNGADVPAAAEATLVVQPSSSISAQAPLPKQAQVPPAPVHPPPPKAWCEICNVGCNTFEVLEQHKNGKKHKKNVKAHEQLQRQKAINGQQNEQIPTTQLNVIDQPKNVQESEKNGCPTENMGCEVAAVNHKDETKLQNNIGETSAVSAEEPEGQTRDNPAVRGHGLKRKMRGGKVSKLARAADGSRRPVETLKAEQFIPFKCELCNVKCESEVVYQSHVTGKKHLSNLKRVHGPQALSGLLGLQSLYPPADINTLSNAINAQVQQGDNDPQVLLAQLLMNVLSQAQGPVAAPPAGPVAAQMLVASTSVDGSSYEPQLPQTQVSAITTNVDTPASISYQVAGESSQQVLGHPQDGSVMTLADNPGAATANDQIPSACEAPTS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1696 519 SMART c2h2final6 338 362 IPR013087 -
Dod07g1696 519 SMART c2h2final6 184 208 IPR013087 -
Dod07g1696 519 SMART ZnF_U1_5 335 369 IPR003604 GO:0003676|GO:0008270
Dod07g1696 519 SMART ZnF_U1_5 181 215 IPR003604 GO:0003676|GO:0008270
Dod07g1696 519 MobiDBLite consensus disorder prediction 283 320 - -
Dod07g1696 519 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 83 492 - -
Dod07g1696 519 MobiDBLite consensus disorder prediction 1 28 - -
Dod07g1696 519 SUPERFAMILY beta-beta-alpha zinc fingers 335 369 IPR036236 -
Dod07g1696 519 SUPERFAMILY beta-beta-alpha zinc fingers 171 218 IPR036236 -
Dod07g1696 519 MobiDBLite consensus disorder prediction 62 142 - -
Dod07g1696 519 MobiDBLite consensus disorder prediction 499 519 - -
Dod07g1696 519 Pfam Zinc-finger of C2H2 type 185 208 - -
Dod07g1696 519 Pfam Zinc-finger of C2H2 type 338 362 - -
Dod07g1696 519 MobiDBLite consensus disorder prediction 69 90 - -
Dod07g1696 519 MobiDBLite consensus disorder prediction 500 519 - -
Dod07g1696 519 Gene3D Classic Zinc Finger 177 217 - -
Dod07g1696 519 Gene3D Classic Zinc Finger 325 368 - -
Dod07g1696 519 PANTHER OS06G0651300 PROTEIN-RELATED 83 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1696 Dod-Chr7 44897925 44903186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1696 186 366 C2H2 Transcription Factor Family AT5G61190 22.652 4.50e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1696 - - adu:107475464 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1696 07 44897925 44903186 Dod07g1696 07 44897925 44903186 ECH