Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1680 ATGGAGTCAAGGAGCTGCATGAACGTGGCATGCGACGCCACGACGTCGATTCGGTGGCGCAAAGGTTGGGCTCTTCGATCCGGCGATTTCGCTGATCTCTGTGATAAGTGCGGTTCTGCTTATGAGCAGTCAACATTTTGTGAGATGTTCCACTCAAACGATTCTGGTTGGAGAGAGTGCACTTCATGTGGCAAGCGTCTACATTGTGGATGTGTTGCCTCTAGGTCTCAACTTGAGTTGCTAGATTCTGGTGGTGTAAGCTGTATAAACTGTGCAAGAAATTCAGGACATCAGCCTATTGCAAGTACTGAAAAGCCTACTGGATCTGGGGCATCAAAGGTAAAAAATGTCAGTGAACAGCTGTGTCCATCTCCAGCAAACCAATTAAATGTGAGGGCTATGCAAGTAAGGCATCATCCAGAGAGTGATGGGCTGAGATGCTGGCTGAAACCTCATAATGTTGATGCAAATGGTCCTCTGACAGAGATAAAAATGGAAGAAGTTTTGCCTTCCACTGGAGAACTTGGAAGCACTTTGATATCGCAATTTCATCGTGAGTCTAATGGATCATCTAAGGCTGTCAAAACAGACAACAGTCAGGCAGAAATGGAAATGCGAGACATATATGAATCGTTAGCGCAAACAAATTTGAGTATGACCATTGCTGCTCCTTTAGGACATTCAAGTCCCTTTCACGGTGCTGTTGTTGATGAAAGGGAACAAAGTAAAACATCACCTCCACTTTTACCGGGGTCAAGGTCTCGCCATCTGTTACCAAAGCCCCCTAGGTCAACTCTTGGTGCTGGCTTAGAAACAAATGCAGGCATGGTGTCCCAGATTCGTGTAGCAAGGCCTCCTGCTGAAGGACGGGGAAGGAACCAGCTACTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCTGGAGATTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTTCCTCCTATCTCTCAACCGGAGGGCCTTCCTTTACGAATCCAAGACGTGAAAGGAAAAGAATGGGTGTTTCAGTTCAGATTTTGGCCGAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACTCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGACACCGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTCATAATGGGGTTTAGGAAGGCATCAAATTCTGCTACAGGACAGGAAACTCATCCGTCTAACATGCCCAATGGCTCTCATTCAAGTGAAACTTCCTATTCTGGTGCTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGAAGTTCAGAATCACCCCTAAATGCACTGTCTCAAAAATGGAATTCAGCTGGTGGTGACATGAAATGGCATAATATTGAAATGCCAGAAAGCAGGAAAAGAGATGGGTTGTATTTGCCACCTATGCTGGTTCCTGAGAAGAAAAGAACTCGGAACATTGGCTCAAAAAGTAAAAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACATGGGAAGAGGCTCAGGATTTGCTTCGTCCACCTCCAACTGTTAAACCAAGCATTGTCATGATTGAGGATCATATATTTGAAGAATACGAAGAACCTCCTGTCTTTGGAAAGAGGAGTATATTTGTAGTTCGCTCTCATGGGATAACTGAGCAGTGGACACAGTGTGATAGTTGCTCAAAATGGCGGAAGTTGCCAGTTGATGTACTTATTCCCCCAAAGTGGACATGTGCTGAGAATTTATGGGATCAGAGCAGGCGTTCATGTCCTGCTCCCAATGAATTGAACCCAAGGGAGCTGGATAATCTTCTGAGACTGAACAAGGAATTCAAGAAGCAAAGAATGACAGCAAGCCAGAGACCGACCCTGGAACATGAATCTTCTGGACTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAGGTGACCCTGGCAGGACACCAGTTGCTACCACTACAAAACACCCTCGCCATAGACCTGGGTGCTCCTGCATTGTTTGTATCCAACCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGTAATGTGTGCATGACAGTCAAACGTCGGTTTAAAACACTGATGATGCGGAAGAAGAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGCAATCTTGGGGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGGCATGTGACGCCTGGTGATGGATCAGAGAATGAAGCAAGGGTGCCAAATGAGTTGGATTCAAGGAGTCAAGACCATGCAGCCGAAGCTGCCAAGGGACAATTGGATTTGAATTCCCAGCCTGATCGAGAGGACATGCAAGCTGGGCCGAACAGTGTGAGCATGATGAGTCTTCTTGAAGAAGCAAATCTACCACTGGAAACCTACCTGAAGCAAAATGGTCTTGCTAGCTTGATGTCTGAGCAGCAAACAAATTCAGCCTCTAATGTGCAGGCACAGACAACCAATGACAATGATAATGACAATGACAGTGAGGGAAGACAAAATGAGGATTGTTGTACTGCTTCTGCTGCTCAGGAGCAGGAAAACAGTCCTGATGAGAACAGTGGGCATGATAAAGATCAAAACAGTTCATGA 2739 0.4556 MESRSCMNVACDATTSIRWRKGWALRSGDFADLCDKCGSAYEQSTFCEMFHSNDSGWRECTSCGKRLHCGCVASRSQLELLDSGGVSCINCARNSGHQPIASTEKPTGSGASKVKNVSEQLCPSPANQLNVRAMQVRHHPESDGLRCWLKPHNVDANGPLTEIKMEEVLPSTGELGSTLISQFHRESNGSSKAVKTDNSQAEMEMRDIYESLAQTNLSMTIAAPLGHSSPFHGAVVDEREQSKTSPPLLPGSRSRHLLPKPPRSTLGAGLETNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASNSATGQETHPSNMPNGSHSSETSYSGAYENLPILSGYSGLLQSQKGSSESPLNALSQKWNSAGGDMKWHNIEMPESRKRDGLYLPPMLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSIVMIEDHIFEEYEEPPVFGKRSIFVVRSHGITEQWTQCDSCSKWRKLPVDVLIPPKWTCAENLWDQSRRSCPAPNELNPRELDNLLRLNKEFKKQRMTASQRPTLEHESSGLDALANAAILGDDAGDPGRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSWGTKDESEVDSTSRHVTPGDGSENEARVPNELDSRSQDHAAEAAKGQLDLNSQPDREDMQAGPNSVSMMSLLEEANLPLETYLKQNGLASLMSEQQTNSASNVQAQTTNDNDNDNDSEGRQNEDCCTASAAQEQENSPDENSGHDKDQNSS* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1680 912 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 860 - -
Dod07g1680 912 ProSiteProfiles Zinc finger CW-type profile. 588 638 IPR011124 GO:0008270
Dod07g1680 912 MobiDBLite consensus disorder prediction 855 912 - -
Dod07g1680 912 MobiDBLite consensus disorder prediction 855 873 - -
Dod07g1680 912 Gene3D - 301 428 IPR015300 -
Dod07g1680 912 Pfam B3 DNA binding domain 323 422 IPR003340 GO:0003677
Dod07g1680 912 Coils Coil 641 661 - -
Dod07g1680 912 MobiDBLite consensus disorder prediction 787 803 - -
Dod07g1680 912 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Dod07g1680 912 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 860 - -
Dod07g1680 912 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
Dod07g1680 912 MobiDBLite consensus disorder prediction 236 270 - -
Dod07g1680 912 MobiDBLite consensus disorder prediction 423 448 - -
Dod07g1680 912 Gene3D - 591 647 - -
Dod07g1680 912 MobiDBLite consensus disorder prediction 680 702 - -
Dod07g1680 912 CDD B3_DNA 321 422 IPR003340 GO:0003677
Dod07g1680 912 Pfam CW-type Zinc Finger 593 635 IPR011124 GO:0008270
Dod07g1680 912 SMART B3_2 323 424 IPR003340 GO:0003677
Dod07g1680 912 MobiDBLite consensus disorder prediction 883 898 - -
Dod07g1680 912 MobiDBLite consensus disorder prediction 740 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1680 Dod-Chr7 44655236 44664701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1680 1 859 B3 DNA Binding Superfamily AT4G32010 51.098 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod07g1680 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1680 - - gmx:100778833 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1680 07 44655236 44664701 Dod07g1680 07 44655236 44664701 ECH