Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1675 ATGGGTCGTGGAAGAACACCTATGGAACTTATTAGAAAGGAGAAAGCTCGGAAGACAACATTCCTGAAGAGAAAGAATGGCTTAATGAAGAAAGTTTATGAGTTTTCCACTCTCTGTGGTGTTGATGTTTGTGTAATTATCTATGGCCCCAACTTCGATGATCAAGAACATGTGGAACCTGAGACATGGCCCCTAGACATTGATGAGGTACACCGCATAATTCAAAAGTATTTTAACACAACTAGTGATAGGCGTCCTAAGATCTACGATGTACAAGAATATTATAAGGATAGGATTAGAAAAGTTGAAGCTGAGATTTCCAAAGTTCATAAAGAGGAGCTCAAGATAATGTACCCAACTTGGAATGACTCCTTCAATGATTTGAGAGAGGAACAATTAAGGATGTTTGTTAGTATTTTGGATGCTAAGATTGATGCTTGCAATCAAAGAATCAATATGCTAAAACATGATCCAAAGGGAAAAGCAATGGTAGAATTAGACAAAGTTGAGGTAGTTACTCCCAACTTGACCTCATCAAATCCTAGTTGCTACCATAATTTCATGAATAACATGTCTCATGCACAACTTTTGCCTCCTCCTCCTATGAATCCTATTAATGACACCAAACAACTACCATTGTCCCCATTTCCACTTGGGGAGAGTTCACAATCTTCCATGCTTCATTTTGATCAAAACTGTATGCAATTGATGGGAAAAAATGGAATGGTGAATTGGGCTGACCAAGTTGGTTCTTTTAATTATGATGCCAAAATTGATATGCTAAAGGACAATGGAGCTCAAAGCAATCAAAGTTCCTTACCATCCTATTACAATGGAAATATACAAACAATGCAACCATATACTTTTGATCTACAGACTCTTGCTTCTCAGGACTCTCAGTATCAAGCAGGTTTCCAAAATCTATTGGATGTGCCACCTGGCTTTCAACTTAATGGATTATATGATACAAATCTGCTTCAAGCTCAAATGTTCAACTACATGCGTGGAAGGAAGCCATAG 1020 0.3775 MGRGRTPMELIRKEKARKTTFLKRKNGLMKKVYEFSTLCGVDVCVIIYGPNFDDQEHVEPETWPLDIDEVHRIIQKYFNTTSDRRPKIYDVQEYYKDRIRKVEAEISKVHKEELKIMYPTWNDSFNDLREEQLRMFVSILDAKIDACNQRINMLKHDPKGKAMVELDKVEVVTPNLTSSNPSCYHNFMNNMSHAQLLPPPPMNPINDTKQLPLSPFPLGESSQSSMLHFDQNCMQLMGKNGMVNWADQVGSFNYDAKIDMLKDNGAQSNQSSLPSYYNGNIQTMQPYTFDLQTLASQDSQYQAGFQNLLDVPPGFQLNGLYDTNLLQAQMFNYMRGRKP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1675 339 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Dod07g1675 339 PANTHER MADS BOX PROTEIN 3 261 - -
Dod07g1675 339 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod07g1675 339 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod07g1675 339 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod07g1675 339 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Dod07g1675 339 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod07g1675 339 CDD MADS 2 51 - -
Dod07g1675 339 PANTHER PROTEIN, PUTATIVE-RELATED 3 261 - -
Dod07g1675 339 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod07g1675 339 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1675 Dod-Chr7 44610471 44611490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1675 1 241 Type I MADS-box Gene Family AT5G55690 33.884 3.98e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod07g1675 SRF-TF 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1675 - - lang:109350953 401.749