Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1649 ATGCGTGAGCCTAGGCTGCCATTTGGGAACAAACCCCTTCATCGTAGCATGGCAGCAGCAGCGGAACATGACCTAGGTGACATAGTGAACAAGGCAGCAACCACGGTGGTCTTACAAAGAACATTAGTGGTGGTCATCGACACCCGGATGCCAGGGAGCGGCGGCGACCTCCTCCTTCTTGGGGAAGAGGGGGTGGTGATGGTGGTAGCAATTGCAACCAAGGACTTCCTTGATCTAGTTTCTGATTATGTGTCACTATACTGGGCAAGCTCAAATGTGGGACTAGAACTTGGATATATGCAATCAAGGGTAAGCATTGGAGATGGTTTGCGTGTTAGTGTGGCAACTACACCTAGCACTTCAAGTCTTGGAGGATCAGAGCAAGATGATGTAGAGTCACAAGGTGATGTTTATATCTGGGGGGAGGTTTTGGCAGATGGGGTTTCCCCTAATGGAATTGGTTCCAAAACAGATGTGTTGATTCCTAAGCTCTTAGAGTCAAATTTTCTTCTTGATATTCATCATATTTCATCTGGTGTAAACCACATAGCTATAGTAACCAGGCAAGGAGAGGTGTTTACTTGGGGAGAAGAATTTAAGGAAGGACTCAGTGATAGAATTGACAAAGATTTTGGTCGGCTGCATCCAATTGAATTCATGGAAGTTCCTAATTTGGTTTTTGTTGCATGTGGTGAGTATCACACTTGTGCTGTATCTAGCTCTAATGATTTTTTCACATGGGGTGATGATATATATAATGCTGGACTTCTTGGACATGGGGCTGATACTAGCCATTGGATACCAAAGAGGATTGATGGCCCATTGGAGGGACTTCAAGTCGTTTCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCAGATGGGAAACTATTTACCTTTGGTGATGGGGCATTTGGTGTTTTGGGACATGGAGATCAAGAAAGTGTGATGTATCCAAAGGAGGTGCAATTGTTAGGTGGATTAAAGGCTATTAAGGTTGCTTGTGGCGTTTGGCACACTGCAGCTATTATAGAAGTTATGTTTCAATCTGGCTCAAATGTTTCGTCATGGAAGCTCTTCACTTGGGGTGATGGCGACAAGTATCGTTTAGGCCATGGAAACAAGGAAACATACCTACAACCCACCCGAGTCACTTCGCTTATTGAATACAATTTCCATCAGGTAGCATGTGGACACACCATGACTGTTGCACTCACTACATCTGGCCATGTCTTCACAATGGGAGATCCTGAACATGGTCAACTAGGAAATCCCATGTCAGCTGGAAAAGCACCTACTCTAGTCCAAGATAAGTTGCTTTGTGAGATTGTTAAGGAGATATCATGTGGAGCACATCATGTTGCTACCTTGACATCCAAAAATGAAGTATATACATGGGGAAGGGGAGCCAATGGAAGATTGGGACATGGAGACATAGAAGATAAGAAATCTCCAACATTGGTGTTAGCCTTGAAAGATAGGCATGTAAAAAATATCTCATGTGGCTCAAACTTTACATCTTGTATATGCACCAATAAATTGGTCCCTGGAAGTGACCAATCTGTTTGCTCTGGTTGTCTACAAGCATTTGGATTAACTAGAATTAAGCACAATTGCAACAATTGTGGATTGGCTTTCTGCCATCCTTGTAGTTCAAAGAAGGCATTGAATGCAGCATTGGCTTCAACACCACAAAAGCTTCGTCGCGTGTGTGATAATTGTTATACTAAACTTAAATTTCTTGAGGCTAGTAGTAATGCTTCCAAATTTACTAGAAAGGCTTCTCATTCTCATTGTTCCACAGAAGGAAAGGAAGTTTTAGACCAGGGAGTATCAAGGTCTTCAAGAACTATCTTGTCTCCCATAACAAAACCAATGAACTACCTTGAGATAAGGAATAGTAAGCTTAGTAACAAATATGATTCTATTTCAATTGTTAGAGCTTCTCAAGTTCCCTCACTCGTACAATTGAAAGATATTGAATTTCCAAGTTCATTGAGTGCTATTCAGAATGTTTTGAAGCCTAGTATACCTCAAGGTGAACCACAAACTCTATCTTTCAATTCAAGATCCACATCCCCAATCACAAGGAGACCAAGCCCTCCGCATTCCGCCAGTCCTAGATTTTCTGCGAGTTATGTTGATACACTGAGAAAGACAAGTGAGCGCTTGAACCAAGAAGTCTCCAAATTGCAAAACCAAATACAAAGTCTACAGTTGAGAAGTGATGTATTAGAAGTGGAAAATCAGAAGCTTCATAAAAATGCAACAGAAGTTTCTGCCTTGGCTGCAGTGGAATATTCTCATCTTGAAATAGCAAAAGAATTTATTGAATCAACTAAAAATCAGTTGAAGGAAATGACTGAGAAGTTCTCACAAGAAACTCTGGACAATAAAATTTTGAGAACCATTCACACTCGAGCGAAAGATATTCTAAAAGAAATTTCAGAATCTGAAACTCCTTTCTTATCATCAAAGTTGGAGTCTGAGCAAATAAATGCACCTGATATTTCTGCCTCAGACAGTGACTTATCTAAATTGCAAGAACAAACACTAGAAGAAAATGTTGTTATTGCAAGAGTTGATCCATCTCAAGTTGAAGAAAATGTTCTTCAAGAAAACAATGGATCAAAGTTGGAGTCTGAGCAACAAAATGCACCTAATATACCTACTTCACATGGTGTCCCTTATAAATTTCCTGAAAACAGACTAGAAGAAAATGTAGATGCAACACAAGTTGATGGAAATTTCCTTCTAGAAAGTAGTGATAGATCAAAGTTGGAAGCAGAGCAACATAATGCACCTAATATACATGCTACACATGGTGTCCTTTCAACACTACATGAACAAAGAATAGAAGAAAATGTTGATGCAACTCAAGTTGGTCCACTGAAAGTTGTTGGAAATGCCCTTCAAGAAAGCAATGCTTCAATGTTGGAATATGAGCAACAAAAAGCACATGATATACCTTCCGTAGCTAATGTCTCACCTAAACTGCATGAACACAAACAAGATGAAATTGTAAACACTTCAGGAGTTGATCCATCTCATGTTGGAGAAAATGTCCTTCAAGAAAGTAAGGGAAAATCTATATCTAGTAATGGAGCACCAGCACCTCCACAGGAAATGGAATATGGTTCTAGATCACTAGACTCTTCAAGATCTGGGAGACAAGGAGAAACACAAATCATTGAACAATTTGAGCCTGGTGTTTTCTTGACACTTGTGTTACAACCTGATGGTATCAAAGTCTTCAAACGAGTCAGATTCAGTAAGCGAAAGTTCACTAAAAGTGAAGCCGAAGAATGGTGGAGCCAAAACAAAATTAGGGTGCTTAGCCAATACTATCGAGTACTTCAAAAGCTAACACCTGGATCATCTAACATCTTATCACCTCATGCTAATGAAAATATTGAAGCATCACCTTCCACAACTTCAACCTAA 3450 0.4029 MREPRLPFGNKPLHRSMAAAAEHDLGDIVNKAATTVVLQRTLVVVIDTRMPGSGGDLLLLGEEGVVMVVAIATKDFLDLVSDYVSLYWASSNVGLELGYMQSRVSIGDGLRVSVATTPSTSSLGGSEQDDVESQGDVYIWGEVLADGVSPNGIGSKTDVLIPKLLESNFLLDIHHISSGVNHIAIVTRQGEVFTWGEEFKEGLSDRIDKDFGRLHPIEFMEVPNLVFVACGEYHTCAVSSSNDFFTWGDDIYNAGLLGHGADTSHWIPKRIDGPLEGLQVVSVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESVMYPKEVQLLGGLKAIKVACGVWHTAAIIEVMFQSGSNVSSWKLFTWGDGDKYRLGHGNKETYLQPTRVTSLIEYNFHQVACGHTMTVALTTSGHVFTMGDPEHGQLGNPMSAGKAPTLVQDKLLCEIVKEISCGAHHVATLTSKNEVYTWGRGANGRLGHGDIEDKKSPTLVLALKDRHVKNISCGSNFTSCICTNKLVPGSDQSVCSGCLQAFGLTRIKHNCNNCGLAFCHPCSSKKALNAALASTPQKLRRVCDNCYTKLKFLEASSNASKFTRKASHSHCSTEGKEVLDQGVSRSSRTILSPITKPMNYLEIRNSKLSNKYDSISIVRASQVPSLVQLKDIEFPSSLSAIQNVLKPSIPQGEPQTLSFNSRSTSPITRRPSPPHSASPRFSASYVDTLRKTSERLNQEVSKLQNQIQSLQLRSDVLEVENQKLHKNATEVSALAAVEYSHLEIAKEFIESTKNQLKEMTEKFSQETLDNKILRTIHTRAKDILKEISESETPFLSSKLESEQINAPDISASDSDLSKLQEQTLEENVVIARVDPSQVEENVLQENNGSKLESEQQNAPNIPTSHGVPYKFPENRLEENVDATQVDGNFLLESSDRSKLEAEQHNAPNIHATHGVLSTLHEQRIEENVDATQVGPLKVVGNALQESNASMLEYEQQKAHDIPSVANVSPKLHEHKQDEIVNTSGVDPSHVGENVLQESKGKSISSNGAPAPPQEMEYGSRSLDSSRSGRQGETQIIEQFEPGVFLTLVLQPDGIKVFKRVRFSKRKFTKSEAEEWWSQNKIRVLSQYYRVLQKLTPGSSNILSPHANENIEASPSTTST* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1649 1149 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 100 1124 - -
Dod07g1649 1149 SMART fyve_4 513 582 IPR000306 GO:0046872
Dod07g1649 1149 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 100 1124 - -
Dod07g1649 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 463 514 IPR000408 -
Dod07g1649 1149 Gene3D - 359 526 IPR009091 -
Dod07g1649 1149 MobiDBLite consensus disorder prediction 679 711 - -
Dod07g1649 1149 ProSiteProfiles BRX domain profile. 1063 1118 IPR013591 -
Dod07g1649 1149 Pfam Transcription factor regulating root and shoot growth via Pin3 1063 1117 IPR013591 -
Dod07g1649 1149 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 519 581 IPR017455 -
Dod07g1649 1149 Coils Coil 716 757 - -
Dod07g1649 1149 Pfam FYVE zinc finger 517 580 IPR000306 GO:0046872
Dod07g1649 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Dod07g1649 1149 SUPERFAMILY RCC1/BLIP-II 133 516 IPR009091 -
Dod07g1649 1149 Coils Coil 772 799 - -
Dod07g1649 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Dod07g1649 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 410 458 IPR000408 -
Dod07g1649 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Dod07g1649 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 296 345 IPR000408 -
Dod07g1649 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 361 407 IPR000408 -
Dod07g1649 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 245 292 IPR000408 -
Dod07g1649 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 190 241 IPR000408 -
Dod07g1649 1149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 527 587 IPR013083 -
Dod07g1649 1149 PRINTS Chromosome condensation regulator RCC1 signature 332 345 IPR000408 -
Dod07g1649 1149 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Dod07g1649 1149 PRINTS Chromosome condensation regulator RCC1 signature 449 465 IPR000408 -
Dod07g1649 1149 PRINTS Chromosome condensation regulator RCC1 signature 465 479 IPR000408 -
Dod07g1649 1149 MobiDBLite consensus disorder prediction 1027 1060 - -
Dod07g1649 1149 SUPERFAMILY FYVE/PHD zinc finger 516 587 IPR011011 -
Dod07g1649 1149 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 335 345 IPR000408 -
Dod07g1649 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 296 IPR000408 -
Dod07g1649 1149 Gene3D - 250 358 IPR009091 -
Dod07g1649 1149 Gene3D - 80 249 IPR009091 -
Dod07g1649 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 410 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1649 Dod-Chr7 44023643 44035400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1649 1062 1117 Major Intrinsic Protein MIP AT1G31880 41.071 1.60e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1649 - - lang:109340921 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0982 01 18176717 18184563 Dod07g1649 07 44023643 44035400 PCT