Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1613 ATGGCCACTCAAACTGTTTCTGGAAACAGGAAATCCTTCAAGAGGCCCAGGTGTGGAAGTCATTCTGTGGAGGACACACTTGAGAAGTGGAAGAAGTACAACAATCAACATGATTTTGGCCCAAAAGGGGTGCAAGTGATTCACAAAGTTCCTCCAAAAGGATCCAAAAAAGGGTGCATGAAAGGTAAAGGAGGGCCTCAGAACTCTGAATGCAACTATAGAGGTGTGAGGCAAAGGATTTGGGGTAAATGGGTCGCTGAAATCCGTGAACCTATTAACCATAATGAGATTAAGAAAGCAAAAAGGCTTTGGCTTGGTACTTTCTCCACTGCAATTGAAGCTGCTCTTGCTTATGATGAAGCAGCTAAGGCCATGTATGGTCCTTGTGCAATTTTGAACTTCCGTGAGCATGATGTGGAGTCAAGAGGATCAATTGAATCACCAAGTAAGGATGCAGTTACATTGAGTAGTTGTGAGATTGCTAAAGTTGAGCATTTGGAAGGTGATCTTCATGATTCCCTTGAAGACAAACCCAATTGTTCTGAGGTTGGAGCTTTGGAGGAAACAAAGGAAGAACATAATAATGTTTCTGAAGTTTGTGTGTTTGACTACTCTATAGAGGAGATGGAGAAGGTTCCAATTGGCAATTTTCAAGATCAGAGAAATGAGAAATGTGATGAAATAGCTCATCATGAGCCAATGAAGGATATTGAAACTGAAATACCAGGAGAAAGTGAAGGAATAGAAAGCGAACCAGCAAAGGTTTTGGAGTTATCTGGCACCAGAGTGGAGCCTATGGATATGGCCATGAATACTGGAGCTGATTGTGGAGATTCTGATGCTACTACTGAGCTTGGCATTTCAGTAAAGGTTGAAGAACCAACAGGAAAATCAATGGAAAGTTTTACATCATGTGAGTTGAGTTGTATCAACCATTGTGATGAATACTTGCACAATAAGCTACAAGATGAGGATTGCAGTCCAAGAGCTAATTATGATAATTTTAGCAACATCAAAACTGAGTCATTTTTGGTTAACAAACAGATGGAGGAAGTAATTTCTGAAATTTTAAGACTTTGTAGGAACCAGTGCTTAAAGGCTAGTCATATTCAATTACAAAATGAGCAATGTAAACATAAACATCCTGATCACATTAAAGATGAGAAGCCAGTAATGCCAATAGAAGATGACATGATGAAAACTCATGATCGCTATGGTTGCTATTATACTGTTGATGAGATAAAAAATGAACTTGAAGCTTCAGATTGCAAGCTAAGAGTTCAGTGCACATCTACTAGTGATTGTAAGGCAGCTATAGTGATGGAACCAAGCCAGGGAATGGATCTGGTTCCTTGTGGCAATGTTGGACCAATTGGAAGAATGTATGAGTTTGAGGCTTTGAAAATCAACACTAATAGTAGAAAGTTTAAAGTGCAAGATAAAGGAAATGGTGGAAATGCATTATCAGAATTTAGATTCGAGCAAACCAGCAAGTTGTCTGATATTTCTCAACAGTTGCTGAAACTAGGTGGTCACCTGCCTGAACATTTGAATGATCTGCAGGTTGCTGACATAGAAATGGGTGATGATTACAGTTTCTTGAGACCTGACTATGATTTTGGCTTGTTGGAAGAACAGAAGTTACTTGATTTATGCTTTTCACGTGTAGAACCTTGA 1677 0.393 MATQTVSGNRKSFKRPRCGSHSVEDTLEKWKKYNNQHDFGPKGVQVIHKVPPKGSKKGCMKGKGGPQNSECNYRGVRQRIWGKWVAEIREPINHNEIKKAKRLWLGTFSTAIEAALAYDEAAKAMYGPCAILNFREHDVESRGSIESPSKDAVTLSSCEIAKVEHLEGDLHDSLEDKPNCSEVGALEETKEEHNNVSEVCVFDYSIEEMEKVPIGNFQDQRNEKCDEIAHHEPMKDIETEIPGESEGIESEPAKVLELSGTRVEPMDMAMNTGADCGDSDATTELGISVKVEEPTGKSMESFTSCELSCINHCDEYLHNKLQDEDCSPRANYDNFSNIKTESFLVNKQMEEVISEILRLCRNQCLKASHIQLQNEQCKHKHPDHIKDEKPVMPIEDDMMKTHDRYGCYYTVDEIKNELEASDCKLRVQCTSTSDCKAAIVMEPSQGMDLVPCGNVGPIGRMYEFEALKINTNSRKFKVQDKGNGGNALSEFRFEQTSKLSDISQQLLKLGGHLPEHLNDLQVADIEMGDDYSFLRPDYDFGLLEEQKLLDLCFSRVEP* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1613 558 MobiDBLite consensus disorder prediction 1 24 - -
Dod07g1613 558 ProSiteProfiles AP2/ERF domain profile. 72 135 IPR001471 GO:0003700|GO:0006355
Dod07g1613 558 Pfam AP2 domain 71 127 IPR001471 GO:0003700|GO:0006355
Dod07g1613 558 CDD AP2 71 137 IPR001471 GO:0003700|GO:0006355
Dod07g1613 558 Gene3D AP2/ERF domain 72 136 IPR036955 GO:0003700|GO:0006355
Dod07g1613 558 SUPERFAMILY DNA-binding domain 72 135 IPR016177 GO:0003677
Dod07g1613 558 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Dod07g1613 558 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Dod07g1613 558 SMART rav1_2 72 141 IPR001471 GO:0003700|GO:0006355
Dod07g1613 558 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 341 - -
Dod07g1613 558 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1613 Dod-Chr7 43448465 43450831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1613 14 134 AP2-EREBP Transcription Factor Family AT2G40350 55.200 6.88e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod07g1613 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1613 - - aip:107625804 492.271