Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1608 ATGAAGCAGGTGGTGGGAATGGTGGTTTCCAATAAGATGCAGAAGTCGGTAGTGGTGGCAGTGGACAGGCTATTCCACCACAAATTGTATAACCGATACGTCAAGCGGACCTCCAAATTCATGGCGCATGATGAGCACAATCAATGTAACATTGGTGACCGAGTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCGTAAACATTGGGTAGTTGCTGAAATTCTCAAGAAAGCACGCATATATACTCCTCCCACTGCACCGGTGTCTGGGAATGCGCCCTCCGGCTCTGAAGCACCTGCTTCCTGA 306 0.4967 MKQVVGMVVSNKMQKSVVVAVDRLFHHKLYNRYVKRTSKFMAHDEHNQCNIGDRVRLDPSRPLSKRKHWVVAEILKKARIYTPPTAPVSGNAPSGSEAPAS* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1608 101 SUPERFAMILY Nucleic acid-binding proteins 2 87 IPR012340 -
Dod07g1608 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 91 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 Gene3D - 1 89 IPR012340 -
Dod07g1608 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 TIGRFAM uS17_bact: ribosomal protein uS17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Dod07g1608 101 PANTHER 37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1608 Dod-Chr7 43420378 43422658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1608 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 38.028 7.55e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1608 K02961 - gmx:100500188 176.407