Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1595 ATGGCGACCATGGGCTCGCAGTGTGCTTGCAGTGGTCAAGAGGTGGTATGGGGACTGATGGTGTTGAAAACGGTTGTTCAATCACACTGTCAGAGTCTTCACCGCCTGAGTGAGTTCACAGAGAGAGAGAGAGAGGAACTTGATCTCTGCGTAGGAGAAAACAAGCTTCCAAAAATGGCTAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTTGCACCAAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTGTTTGCCTTTGATCCTCATCCTGCGAAACAGACTAAAGTATGCTTTAACATATAGAGAAGTTATTGCCATCCTGATGCAACGCCATGTCCTTGTTGATGGCAAGGTTAGGACAGACAAAACGTATCCTGCTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAGTTTCCGTCTACTCTATGACACAAAAGGTCGTTTCCGTCTCCACTCTCTAAGGGATGAAGAGGCAAAGTTCAAGCTCTGCAAGGTTCGATCTGTTCAATTTGGGCAGAAGGGCATCCCCTATTTGAACACCTATGATGGTCGCACCATCCGCTACCCAGATCCACTAATTAAGGCCAATGACACTATCAAGCTGGACCTGGAAACTAACAAGATCACTGATTTCATCAAGTTTGATGTGGGGAATGTTGTTATGGTTACCGGAGGAAGGAACAGAGGTCGTGTTGGTGTCATCAAGAACCGGGAGAAGCACAAGGGAAGTTTTGAGACCATCCATGTCCAAGATGCAACTGGTCATGAGTTTGCGACCCGCATGGGTAATGTCTTCACCATTGGCAAAGGAACAAAGCCTTGGATATCTCTTCCCAAAGGCCGAGGTATCAAGTTGTCTATCATTGAGGAGGCTAGAAAGAGGCTTGCTGCTCAACATGAAACAGTTGCTTAA 969 0.4634 MATMGSQCACSGQEVVWGLMVLKTVVQSHCQSLHRLSEFTEREREELDLCVGENKLPKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGRGIKLSIIEEARKRLAAQHETVA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1595 322 ProSiteProfiles S4 RNA-binding domain profile. 100 159 - -
Dod07g1595 322 PANTHER 40S RIBOSOMAL PROTEIN S4 60 278 - -
Dod07g1595 322 Pfam 40S ribosomal protein S4 C-terminus 270 317 IPR032277 -
Dod07g1595 322 Pfam RS4NT (NUC023) domain 61 97 IPR013843 -
Dod07g1595 322 Gene3D - 233 303 IPR014722 -
Dod07g1595 322 Hamap 30S ribosomal protein S4e [rps4e]. 65 296 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dod07g1595 322 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 60 278 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dod07g1595 322 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 279 322 IPR000876 GO:0003735|GO:0005840|GO:0006412
Dod07g1595 322 CDD KOW_RPS4 233 287 IPR041982 -
Dod07g1595 322 Pfam S4 domain 105 148 IPR002942 GO:0003723
Dod07g1595 322 CDD S4 109 170 - -
Dod07g1595 322 ProSitePatterns Ribosomal protein S4e signature. 66 80 IPR018199 -
Dod07g1595 322 Gene3D - 180 230 IPR038237 -
Dod07g1595 322 Pfam KOW motif 235 268 IPR005824 -
Dod07g1595 322 Gene3D - 59 175 IPR036986 GO:0003723
Dod07g1595 322 SMART kow_9 232 259 IPR005824 -
Dod07g1595 322 Pfam Ribosomal family S4e 153 227 IPR013845 -
Dod07g1595 322 SMART s4_6 100 164 IPR002942 GO:0003723
Dod07g1595 322 PANTHER 40S RIBOSOMAL PROTEIN S4 279 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1595 Dod-Chr7 43274133 43280250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1595 59 318 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.538 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1595 K02987 - gmx:100801792 500.36