Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1578 ATGGACATCGACGAAGCTTCTGGACCCAAAGAAGGAAAGGTCGTTTTGGTGATCTTAGTGGGAGCACCGGGGAGTGGTAAATCAACTTTCTGCGAAGAAGTGATGCGTTCCTCTATTCGCACTTGGGTTCGAGTTTGCCAGCTTTGTATTTCTCGTTCTGTCAAACGGACTGGTCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCAAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAAACTATGCATCCTGAAAAGCATAAGGATGAGTTGCTCGAGATTTCAGAAGATGTTGTTGTTCTGCATGATCTGTATCCTAAGTCACAGAAGCATGTTCTGGTATTGGCTCGAACTAGAGGTGTTGATTGCCTGGCAGGTGTCCAAAATGAACATCTTCCATTGTTGAAGAAGATGCATGCCGTGGGTTTAAACTGGGCTGAGAAGTTCTTACAGGAGAATGCTTCACTTGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAGCTACATTTACATGTCATCAGCCAGGACTTCGAATCGAAACATTTGAAGAATAAGAAGCACTGGAACTCATTCAACACTGCATTCTTTCGTGACTCGGTTGATGTAATTGATGAGATCTCTAAGCATGGGAAAGCAACATTGAAAGATGATGACAAACTTTTTTCTATGGAATTGAGGTGCCACAGATGTAGAAGTGCACATCCCAATGTACCAAGGTTAAAATCACATATTAGCAGCTGCCAAGCTCCTTTTCCTGCTTACTTGCTTGAAAATGGACGCCTGGTGCATGCACCTGCTGAACCCCCACAATAG 867 0.4325 MDIDEASGPKEGKVVLVILVGAPGSGKSTFCEEVMRSSIRTWVRVCQLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQTMHPEKHKDELLEISEDVVVLHDLYPKSQKHVLVLARTRGVDCLAGVQNEHLPLLKKMHAVGLNWAEKFLQENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDVIDEISKHGKATLKDDDKLFSMELRCHRCRSAHPNVPRLKSHISSCQAPFPAYLLENGRLVHAPAEPPQ* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1578 288 ProSitePatterns HIT domain signature. 174 192 IPR019808 -
Dod07g1578 288 Gene3D - 88 268 IPR036265 -
Dod07g1578 288 Pfam Scavenger mRNA decapping enzyme C-term binding 92 205 - -
Dod07g1578 288 PANTHER APRATAXIN 47 79 IPR026963 GO:0003677|GO:0006281|GO:0033699
Dod07g1578 288 PANTHER APRATAXIN 14 47 IPR026963 GO:0003677|GO:0006281|GO:0033699
Dod07g1578 288 PANTHER APRATAXIN 96 284 IPR026963 GO:0003677|GO:0006281|GO:0033699
Dod07g1578 288 PANTHER APRATAXIN-RELATED 47 79 - -
Dod07g1578 288 PANTHER APRATAXIN-RELATED 14 47 - -
Dod07g1578 288 PANTHER APRATAXIN-RELATED 96 284 - -
Dod07g1578 288 Pfam C2HE / C2H2 / C2HC zinc-binding finger 210 263 IPR032566 -
Dod07g1578 288 SUPERFAMILY HIT-like 89 249 IPR036265 -
Dod07g1578 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 41 IPR027417 -
Dod07g1578 288 ProSiteProfiles HIT domain profile. 92 200 IPR011146 GO:0003824
Dod07g1578 288 Gene3D - 4 48 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1578 Dod-Chr7 42877946 42883339 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1578 46 96 C2H2 Transcription Factor Family AT5G01310 78.431 5.98e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1578 K10863 - gmx:100786762 336.65