Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1576 ATGGACATCGACGAAGCTTCTGGACCCAAAGAAGGAAAGGTCGTTTTGGTGATCTTAGTGGGAGCACCGGGGAGTGGTAAATCAACTTTCTGCGAAGAAGTGATGCGTTCCTCTATTCGCACTTGGGATCGCGTTTGCCAGCTTTGTATTTCTCGTTCTGTCAAACGGACTGGTCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCAAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAAAGATTTGCATCAATTGTGAGGAGCCAGGCAGAGCGACCTGGAGAAGGAAACGAAAACCTTGGAAAACTATCTTTGGAGTTCCAGGATCAATCTGAAAGTTGTTCTAGAAATCATTTAACTAATGTTGATCAAAAGAGTAAGAGAGATGCTGATCATGAATCTGAAAAGAGCAAAAAATATAAGGGAAGTCAAGATAGTTGTGAATTGACCTCTGATTCTAGGGATGAAAGAGTACATTCAGAACATAAAAAGCCTGATAGGAGCATGAATAAGGCATGGGGATCATGGGCACAAGCTCTTTACCAAATAGCTATGCATCCTGAAAAGCATAAGGATGAGTTGCTCGAGATTTCAGAAGATGTTGTTGTTCTCAATGATCTGTATCCTAAGTCACGGAAGCATGTTCTGGTATTGGCTCGAACTAGAGGTGTTGATTGCCTGGCAGGTGTCCAAAATGAACACCTTCCATTGTTGAAGAAGATGCATGCCGTGGGTTTGAACTTGGCTGAGAAGTTCTTACAGGAGAATGCTTCACTTGTATTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAGCTGCATTTACATGTCATCAGCCAGGACTTCGAATCGAAACATTTGAAGAATAAGAAGCACTGGAACTCATTCAACACTGCATTCTTTTGCGACTCAGTTGATGTAATTGATGAGATCTCTAAGCATGGGAAAGCAACATTGAAGGATGATGACAAACTGTTATCTATGGAATTGAGGTGCCACAGATGTAGAAGTGCACATCCCAATATACCAAGGTTAAAATCACATATTAGCAGCTGCCAAGCTCCTTTTCCTGCTTGCTTGCTTGAAAATGGACGTCTGGTGCATGCACCTGCTGAACCCCCACAATAG 1176 0.4235 MDIDEASGPKEGKVVLVILVGAPGSGKSTFCEEVMRSSIRTWDRVCQLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFNRITFCQRFASIVRSQAERPGEGNENLGKLSLEFQDQSESCSRNHLTNVDQKSKRDADHESEKSKKYKGSQDSCELTSDSRDERVHSEHKKPDRSMNKAWGSWAQALYQIAMHPEKHKDELLEISEDVVVLNDLYPKSRKHVLVLARTRGVDCLAGVQNEHLPLLKKMHAVGLNLAEKFLQENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFCDSVDVIDEISKHGKATLKDDDKLLSMELRCHRCRSAHPNIPRLKSHISSCQAPFPACLLENGRLVHAPAEPPQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1576 391 Gene3D - 190 371 IPR036265 -
Dod07g1576 391 SUPERFAMILY HIT-like 185 352 IPR036265 -
Dod07g1576 391 MobiDBLite consensus disorder prediction 136 184 - -
Dod07g1576 391 PANTHER APRATAXIN-RELATED 47 387 - -
Dod07g1576 391 PANTHER APRATAXIN-RELATED 14 47 - -
Dod07g1576 391 PANTHER APRATAXIN 14 47 IPR026963 GO:0003677|GO:0006281|GO:0033699
Dod07g1576 391 Pfam C2HE / C2H2 / C2HC zinc-binding finger 313 366 IPR032566 -
Dod07g1576 391 MobiDBLite consensus disorder prediction 127 185 - -
Dod07g1576 391 PANTHER APRATAXIN 47 387 IPR026963 GO:0003677|GO:0006281|GO:0033699
Dod07g1576 391 Gene3D - 4 48 IPR027417 -
Dod07g1576 391 Pfam Scavenger mRNA decapping enzyme C-term binding 196 308 - -
Dod07g1576 391 ProSitePatterns HIT domain signature. 277 295 IPR019808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1576 Dod-Chr7 42695255 42700627 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1576 11 47 C2H2 Transcription Factor Family AT5G01310 59.459 4.10e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1576 K10863 - gmx:100786762 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1576 07 42695255 42700627 Dod07g1576 07 42695255 42700627 ECH