Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1538 ATGGAAATGGCTTCGTCAAGCCCACGCTCCCCCGAAGAGATCTTCAAGGACTTCACCGCTCGTAGAACCGCCATCATTCGCGCTTTATCTCAAGATGTTGATGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACTTGTGTCTCTATGGACATCCAAATGAGACCTGGGAAGTAACTCTGCCGGCTGAGGAAGTTCCACCGGAGCTTCCGGAGCCGGCTCTCGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCCCTTGTTGCTGTGCACAGCGATTCGTGGTTGCTTTCTGTCGCGTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAGCGTTTATTTAGCTTCATCAATGATCTTCCTACTGTTTTTGAAGTTGTGACTGAGAGGAAGCCAGTGAAGGACAAGCCCACTGTAGACAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTCAAAAGCAACCCAAAGTTCGATGAGGGTTATGAGGAGGATGACGACGAGCACAGCGAAACTCTTTGTGGGAGCTGCGGCGGAAACTACAACGCGGATGAATTCTGGATTGGCTGCGATATATGCGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCTCAATGCAGCATGAAGAGGGGCAGGCCCTAG 720 0.4972 MEMASSSPRSPEEIFKDFTARRTAIIRALSQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSFINDLPTVFEVVTERKPVKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFDEGYEEDDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPQCSMKRGRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1538 239 Pfam PHD-finger 186 234 IPR019787 -
Dod07g1538 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 238 - -
Dod07g1538 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Dod07g1538 239 SMART PHD_3 185 233 IPR001965 -
Dod07g1538 239 MobiDBLite consensus disorder prediction 149 163 - -
Dod07g1538 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Dod07g1538 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Dod07g1538 239 Pfam Alfin 11 135 IPR021998 GO:0006355|GO:0042393
Dod07g1538 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Dod07g1538 239 CDD PHD_AL_plant 185 235 IPR044104 -
Dod07g1538 239 MobiDBLite consensus disorder prediction 139 176 - -
Dod07g1538 239 PANTHER CPG BINDING PROTEIN 4 238 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1538 Dod-Chr7 41750726 41760005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1538 1 238 Alfin-like Transcription Factor Family AT5G05610 76.250 9.63e-120 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dod07g1538 Alfin 6.4e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1538 - - gmx:100793126 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1538 07 41750726 41760005 Dod07g1538 07 41750726 41760005 ECH
Dod01g1095 01 21629512 21633439 Dod07g1538 07 41750726 41760005 PCT