LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1519	ATGAAGAATGCAAAGGGCAAGGTCGTGGCCAGGAGCTTGAAAGAAACACTGAAGCCGGTTGATGACCGAAAGGTTGGAAAGCGAAAGGCTTCTTATAAGCCTGAAAAAAAGGCAAAGAAGGAGAAGAAGGCCAAGAAAGACCCCAACAAACCGAAAAGACCACCCAGTGCTTTCTTTGTTTTTCTTGAGGAGTTCAGAAAGACCTTTAAGGCAGAGAATCCTGGTGTGAAGGCCGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTGACCGATGCAGAGAAAGCTCCATATGAAGCCAAGGCTGCGAAAAGGAAAGCTGAGTATGAGAAGCTTATGAATGCTTATAATAAAAAGCAGGCAAGCTCGGCAGATGATGCAGATGATGAATCAGACAAATCCAAGTCTGAAGTGAATGATGAAGATGATGCCACTGGAGAGGAGGATCACCAAGAGGAGGATGAAGAGGACGAAGACGATGAGGACGAAGATGATGAATGA	510	0.4549	MKNAKGKVVARSLKETLKPVDDRKVGKRKASYKPEKKAKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPGVKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKAEYEKLMNAYNKKQASSADDADDESDKSKSEVNDEDDATGEEDHQEEDEEDEDDEDEDDE*	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g1519	169	Pfam	HMG (high mobility group) box	51	120	IPR009071	-
	Dod07g1519	169	MobiDBLite	consensus disorder prediction	8	29	-	-
	Dod07g1519	169	CDD	HMGB-UBF_HMG-box	51	116	-	-
	Dod07g1519	169	Coils	Coil	102	122	-	-
	Dod07g1519	169	PANTHER	HIGH MOBILITY GROUP B PROTEIN 1	1	162	-	-
	Dod07g1519	169	Gene3D	High mobility group box domain	33	137	IPR036910	-
	Dod07g1519	169	MobiDBLite	consensus disorder prediction	1	55	-	-
	Dod07g1519	169	SUPERFAMILY	HMG-box	42	123	IPR036910	-
	Dod07g1519	169	MobiDBLite	consensus disorder prediction	120	169	-	-
	Dod07g1519	169	MobiDBLite	consensus disorder prediction	125	143	-	-
	Dod07g1519	169	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	51	120	IPR009071	-
	Dod07g1519	169	SMART	hmgende2	50	121	IPR009071	-
	Dod07g1519	169	MobiDBLite	consensus disorder prediction	144	169	-	-
	Dod07g1519	169	PANTHER	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	1	162	IPR031061	-
	Dod07g1519	169	PRINTS	High mobility group (HMG1/HMG2) protein signature	104	124	-	-
	Dod07g1519	169	PRINTS	High mobility group (HMG1/HMG2) protein signature	17	37	-	-
	Dod07g1519	169	PRINTS	High mobility group (HMG1/HMG2) protein signature	85	104	-	-
	Dod07g1519	169	MobiDBLite	consensus disorder prediction	30	49	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g1519	Dod-Chr7	41529831	41532821	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	HMG	Dod07g1519		HMG_box	4.1e-25	CL0114

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1519	K25507		-	gmx:100499704	176.022