Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1487 ATGAACAGGGGAATGGAAGTTCTCTCTCCAGCCTCTTATCTCCATAACTCTAATTGGTTGTTCCAGGAAAGTGAAGGAACCAAATGGACTCCAGAAGAGAACAAAAGGTTTGAGAATGCTTTGGCTTTTTATGACAAGGAGACCCCAGATCGTTGGGTGAAGGTTGCAGCCATGATTCCTGGCAAGACTGTTGGTGATGTGATCAAGCAGTATAGAGAACTTGAAGAAGATGTGAGTGTCATTGAATCTGGGTTCATACCAGTTCCAGGGTACGCTACTGGCTCTTTCACATTGGAGTGGGTCAATAATCAAGGCTTTGATGGGTTGAAGCAATTTTATGGTGCTGGTTGCAAAAGGGGCACTTCCACTAGGCCTTCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGACTATTTCTGATGGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATTTCTAGGAATTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAAAAGTATTTCATCAGGCAACTTACTGGAGGGAAGGATAAGAGGAGATCCAGTATCCATGATATCACAATGGTTAATCTCCCAGAAATAAAATCTCCTTCATCAGACAGCAACAGACCTCCTTCTCCGGATCACTCACTGAAGGCTGTGAGTCCTCATCGGAATCAGCAACTGTCTGGCATGGTTAAACAGGAATATGACTGGAAATCGCCGTATGAGGCCCTGCCTATGGTTTTCAATTCGACAAATGGAAACATGTTCATGACACCACTGTGTGGGATTTCTTCATATGGATCTAAACAACAGGAGCAGTATTTACTCAGAGGCACTCTCCATGGGTGCCAATTCGGACCTTATGATAATATTATGCCAAGTTTTGAGTTCTGA 915 0.4426 MNRGMEVLSPASYLHNSNWLFQESEGTKWTPEENKRFENALAFYDKETPDRWVKVAAMIPGKTVGDVIKQYRELEEDVSVIESGFIPVPGYATGSFTLEWVNNQGFDGLKQFYGAGCKRGTSTRPSEQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLPEIKSPSSDSNRPPSPDHSLKAVSPHRNQQLSGMVKQEYDWKSPYEALPMVFNSTNGNMFMTPLCGISSYGSKQQEQYLLRGTLHGCQFGPYDNIMPSFEF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1487 304 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Dod07g1487 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Dod07g1487 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 294 IPR043363 -
Dod07g1487 304 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Dod07g1487 304 SMART sant 132 182 IPR001005 -
Dod07g1487 304 SMART sant 25 77 IPR001005 -
Dod07g1487 304 CDD SANT 28 74 IPR001005 -
Dod07g1487 304 MobiDBLite consensus disorder prediction 191 232 - -
Dod07g1487 304 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Dod07g1487 304 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Dod07g1487 304 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 5 294 - -
Dod07g1487 304 CDD SANT 135 180 IPR001005 -
Dod07g1487 304 Gene3D - 21 88 - -
Dod07g1487 304 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Dod07g1487 304 Gene3D - 134 184 - -
Dod07g1487 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Dod07g1487 304 MobiDBLite consensus disorder prediction 204 232 - -
Dod07g1487 304 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1487 Dod-Chr7 40676384 40678908 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod07g1487 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1487 - - gmx:778077 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1487 07 40676384 40678908 Dod08g0724 08 8699820 8702135 ECH
Dod07g1487 07 40676384 40678908 Dod07g1487 07 40676384 40678908 ECH
Dod07g1487 07 40676384 40678908 Dod08g1080 08 13751003 13753805 ECH
Dod07g1487 07 40676384 40678908 Dod05g0569 05 8242646 8245542 ECH