LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1464	ATGATAGTTGCTATGGACTTGAATGCCTCGCCAGTCCCGGAGGAAGACGAAGATACCTTTGAGGGACATATTGTTGAAGAGTATCATGCACCAGAAGAACGCATCGAAACTGCAGTGGATATAGCACGTCGGGAGCGTGAAGAAAGAAAGGAGCTATTGAAGCGAAAACGTTCTGATGACAAACCTATGCATTTATCACAGTCACCTGGATATGATCAGCTGTTTCATTCTAAGAACCTTAAATCATATGATAGAAGTAGGCTTCCTCCAGGGTGGTTGGATTGCCCCTCATTTGGCCAGGAAATTTTTGGCATGATACCTTCTAAGGTTCCACTTGGTGAATCATTCAATGACTCCATTGCTCCTGGTAAAAGATATTCATTTAAACAAGTGATACATCAGCAGAGAGTTGCAGGGAGAAAACTTGGTCTGGTGATTGATCTGACAAATACTACTCGATACTATCCAGTGTCAGATTTAAAGAAAGAGGGTATTAAGCACGTTAAGATCCAATGCAAGGGCCGCGATTCTGTACCTGATAATTTATCTGTGAATCAGTTTGTCTATGAGGTTACACAATTTATATCACGTCAAAAACACTCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGCACTGGATATATGGTCGTACACTATCTAATGCGTGCTATGTCAATGTCCGTTACTCAGGCAATAAAAATATTTTCTGATGCACGCCCTCCAGGAATATACAAACCTGATTATATTGATGCATTGTACACATTTTATCACGAAAAAAGGCCTGAAATGGTTCCAGATGATGATGATGATGATGGAGTACCAGGCCCTCATTTGCAAGAGAACCATGAGACAGACACCCGAATGACAAATGATGATGTGTTGGGAGATGAGATACCTACTGATCAGCAAGATGCATTCCGGAAGTTCTGTTATCAGTCACTTAAATTGGGTGTTGGGGCTAGGGGACATACACAATTTCCAGGTTCACACCCCGTTTCCCTAAACAGGGAGAATTTGCAGTTGTTACGACAACGTTATTATTATGCAACATGGAAAGCTGATGGTACAAGATACATGATGCTAATAACAATGGATGGGTGTTACTTAATTGATAGAAATTTCAACTTTCCGAAGGGTCCAAATGAGGTTTCCCTGCAGGGGTACAAACGATGGGGTGGGCGAGAAGACCCATCACTTCACATTACTTGA	1221	0.4136	MIVAMDLNASPVPEEDEDTFEGHIVEEYHAPEERIETAVDIARREREERKELLKRKRSDDKPMHLSQSPGYDQLFHSKNLKSYDRSRLPPGWLDCPSFGQEIFGMIPSKVPLGESFNDSIAPGKRYSFKQVIHQQRVAGRKLGLVIDLTNTTRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLSVNQFVYEVTQFISRQKHSKKYILVHCTHGHNRTGYMVVHYLMRAMSMSVTQAIKIFSDARPPGIYKPDYIDALYTFYHEKRPEMVPDDDDDDGVPGPHLQENHETDTRMTNDDVLGDEIPTDQQDAFRKFCYQSLKLGVGARGHTQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFPKGPNEVSLQGYKRWGGREDPSLHIT*	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g1464	406	MobiDBLite	consensus disorder prediction	52	73	-	-
	Dod07g1464	406	PANTHER	MRNA-CAPPING ENZYME	271	381	-	-
	Dod07g1464	406	PANTHER	MRNA-CAPPING ENZYME	3	268	-	-
	Dod07g1464	406	Gene3D	Protein tyrosine phosphatase superfamily	63	275	IPR029021	-
	Dod07g1464	406	Pfam	Dual specificity phosphatase, catalytic domain	134	260	IPR000340	GO:0008138\|GO:0016311
	Dod07g1464	406	Coils	Coil	35	55	-	-
	Dod07g1464	406	ProSitePatterns	Tyrosine specific protein phosphatases active site.	207	217	IPR016130	GO:0016311\|GO:0016791
	Dod07g1464	406	MobiDBLite	consensus disorder prediction	267	300	-	-
	Dod07g1464	406	SUPERFAMILY	DNA ligase/mRNA capping enzyme, catalytic domain	296	379	-	-
	Dod07g1464	406	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	185	254	IPR000387	GO:0016311\|GO:0016791
	Dod07g1464	406	Gene3D	DNA ligase/mRNA capping enzyme	286	393	-	-
	Dod07g1464	406	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	88	270	IPR029021	-
	Dod07g1464	406	SMART	dsp_5	122	262	IPR020422	GO:0006470\|GO:0008138
	Dod07g1464	406	PANTHER	MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED	271	381	-	-
	Dod07g1464	406	PANTHER	MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED	3	268	-	-
	Dod07g1464	406	Pfam	mRNA capping enzyme, catalytic domain	334	380	IPR001339	GO:0004484\|GO:0005524\|GO:0006370
	Dod07g1464	406	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	115	266	IPR020422	GO:0006470\|GO:0008138
	Dod07g1464	406	MobiDBLite	consensus disorder prediction	267	298	-	-
	Dod07g1464	406	CDD	RNA_5'-triphosphatase	91	257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g1464	Dod-Chr7	39515399	39528381	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod07g1464	1	380	Protein tyrosine phosphatase (PTP) family	AT3G09100	64.691	1.57e-176	506

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1464	K13917		-	gmx:100776633	662.914

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod07g1464	07	39515399	39528381	Dod07g1464	07	39515399	39528381	ECH