Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1284 ATGAAGTCTGCTATGGCTCAGAGTAACTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATCTTTTGAAAAGAAAATTGCATGCCTCTGCGAAAGCTTTTATGGCAGAAGGGAAAGTTGCCACGGATCCAGTAGCAATTGATGCGCCCGGAGGGTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGATATATTTATTGCAAGAACAAATGAGAAACACTCTGAGCCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGTCAGAGAACAACAACTTCAAATACAACAATTGCAACTATTGCAGCAGCGCAATGCACAGTTACAACGAAGAGATCCTAATCATCCTTCACTAGGCGGTTCCATAAATTCTGAAGGAATGTTGGGGCAGCCACCAGCAAGTGTGTTGACCATGAAAATGTATGAAGAACGAATGAAGCACCCTCATTCGATGGATTCAGAGTCATCTCCAGCTCTTATTGATGCCAACAGGATGGCCCTTCTTAAGTCGGGAACTAGTCATCAAGGCCAATTGGTTCAAGGCAATTCAGGGAATATGCCCACTGCATTGCAGCAAATTCAAGCTCGGACTCCTTTGACCACTGACATTAAAGGAGAAGTTAACTTGGGTGCCACTCCAAAGAGTTTACAGATGGATACATCAATTTATCGACAAGCAATTTTACATTCAAAATCTGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCACTAAAAGGATGGCCTTTAACTGGAATTGATCAACTGCGACCTAGTTTAGGTGTACAAGTTCAGAAGCCTAATTTGACAACGCAAAACCAATTCCTTTTGACCTCACAACAGCAGCAGGCCTTGGCACAGGCTCAGGCACAAAATAACCTTGGAAATTCAGCTAATTATGGTGATATGGATCCACGTAGACTTTGTGGTCTTCCTCGTAGTAGCTTGGGTGCAAAAGAGGATCAATCCACCAGGAATGACGGATCAATGTGTTCCCAAGTTCAATCAGGCTCACCTAAGATGAAGATGGCTCAAATGCAACATTCATCATCTCAACAGCCAGAACAATTGCAGCAGCAGCAGCAGCAAATGCACCAGAATAATAGAAAAAGAAAACAGCCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACGGTTGGTCCTTCGCCTAGTTCACCGCAATCAACACACACACCTGGTGATGGGATAAATACAGCAAGCAGCATGCAAAATGTTAACAGTGTGCAGAAGAGCTTGATGATGTATGGTGCTGATGGTACAGGAGGCCTTGCTTCATCTTCAAATCTTCTGGATGACATGGAGCGATTTGGAGATGTTGGTGCTTTAGATGATAATGTCGAGTCCTTTTTATCAAATGATGGAGGAGACGGTGGAAATCTGTATGGAACAATAAAACAAAGTCCAGCTGAGCACCAAAAAGAATCTTCAAAAGGTTTCACCTTTGCTGAACTTGGTTGCATTCGAACAAGGAACAGCAAAGTCACTTGCTGTCATTTTTCTTCAGATGGAAAGTTACTTGCCAGTGCTGGGCATGACAAGAAGGTTGTCCTCTGGAACATGGAAAATCTACAGACAGAAAGCACTCCTGAAGAACACAAATCTATTATTACGGATATCCGTTTTAGACCAAATTCATCTCAGTTGGCTACAGCCTCGGTTGATAAATCTGTGCGACTGTGGGATGCAGCCAATCCAAGCTATTGTATGCAAGAATTTAGTGGACACAGTTCTGCAGTAATGTCTCTCGATTTCCATCCTAAGAAAACTGATCTTTTCTGTTTCTGTGATAATGACAATGAAATTCGCTACTGGAATATTTCTTCCCAGTCATGCTCCCGGGTATCTAAGGGAGGTAATGCACAAGTGAGGTTTCAACCCAGAGTAGGACAATTACTAGCGGCAGCATCAGATAAAGTAGTGTCAATTTTTGATGTTGAAACGGACAGACAAATATATTCATTCCAGGGTCATCCTGAACCGGTGAACTATATTTGCTGGGATGCAAATGGAGAACGCTTGGCCTCTGTGAGTCAGAACTTGGTGAAGATTTGGTCATTGGCTTCTGGTGAATGCATTCAGGAGCTCATCTCCGAGCTCATCTCCACCACGAACCAGTTCTATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTTGTGGGAGGGACTTCGTGCTTAGAGCTGTGGAACATGGCTGAGAACAGAACCATGTCAATTTCAGCACACGAAAATATAATATCTGCTTTGGCACAGTCTCCTGCCACTGGAATGGTTGCCTCTGCCAGTCATGACAGCTCTGTAAAGTTGTGGAAATAA 2364 0.4315 MKSAMAQSNWEADKMLDVYIHDYLLKRKLHASAKAFMAEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIETQQMKVREQQLQIQQLQLLQQRNAQLQRRDPNHPSLGGSINSEGMLGQPPASVLTMKMYEERMKHPHSMDSESSPALIDANRMALLKSGTSHQGQLVQGNSGNMPTALQQIQARTPLTTDIKGEVNLGATPKSLQMDTSIYRQAILHSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPSLGVQVQKPNLTTQNQFLLTSQQQQALAQAQAQNNLGNSANYGDMDPRRLCGLPRSSLGAKEDQSTRNDGSMCSQVQSGSPKMKMAQMQHSSSQQPEQLQQQQQQMHQNNRKRKQPSSSGAANSTGTGNTVGPSPSSPQSTHTPGDGINTASSMQNVNSVQKSLMMYGADGTGGLASSSNLLDDMERFGDVGALDDNVESFLSNDGGDGGNLYGTIKQSPAEHQKESSKGFTFAELGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMENLQTESTPEEHKSIITDIRFRPNSSQLATASVDKSVRLWDAANPSYCMQEFSGHSSAVMSLDFHPKKTDLFCFCDNDNEIRYWNISSQSCSRVSKGGNAQVRFQPRVGQLLAAASDKVVSIFDVETDRQIYSFQGHPEPVNYICWDANGERLASVSQNLVKIWSLASGECIQELISELISTTNQFYSCVFHPSYSTLLVVGGTSCLELWNMAENRTMSISAHENIISALAQSPATGMVASASHDSSVKLWK* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1284 787 MobiDBLite consensus disorder prediction 322 415 - -
Dod07g1284 787 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 6 787 - -
Dod07g1284 787 MobiDBLite consensus disorder prediction 106 131 - -
Dod07g1284 787 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Dod07g1284 787 SUPERFAMILY WD40 repeat-like 499 787 IPR036322 GO:0005515
Dod07g1284 787 Coils Coil 83 113 - -
Dod07g1284 787 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Dod07g1284 787 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Dod07g1284 787 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Dod07g1284 787 Pfam WD domain, G-beta repeat 542 576 IPR001680 GO:0005515
Dod07g1284 787 Pfam WD domain, G-beta repeat 753 787 IPR001680 GO:0005515
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 623 - -
Dod07g1284 787 SMART WD40_4 707 746 IPR001680 GO:0005515
Dod07g1284 787 SMART WD40_4 537 576 IPR001680 GO:0005515
Dod07g1284 787 SMART WD40_4 662 700 IPR001680 GO:0005515
Dod07g1284 787 SMART WD40_4 748 787 IPR001680 GO:0005515
Dod07g1284 787 SMART WD40_4 580 620 IPR001680 GO:0005515
Dod07g1284 787 SMART WD40_4 495 534 IPR001680 GO:0005515
Dod07g1284 787 SMART WD40_4 623 659 IPR001680 GO:0005515
Dod07g1284 787 Pfam LisH 14 40 IPR006594 GO:0005515
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Dod07g1284 787 Gene3D - 485 634 IPR015943 GO:0005515
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Dod07g1284 787 MobiDBLite consensus disorder prediction 301 415 - -
Dod07g1284 787 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 755 787 - -
Dod07g1284 787 SMART Lish 12 44 IPR006594 GO:0005515
Dod07g1284 787 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 6 787 IPR044716 GO:0003714
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 755 787 IPR001680 GO:0005515
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Dod07g1284 787 Gene3D - 635 787 IPR015943 GO:0005515
Dod07g1284 787 CDD WD40 506 787 - -
Dod07g1284 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Dod07g1284 787 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Dod07g1284 787 PRINTS G protein beta WD-40 repeat signature 774 787 IPR020472 -
Dod07g1284 787 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1284 Dod-Chr7 34323607 34335496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1284 520 772 U-box Gene Family AT2G33340 28.077 6.46e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dod07g1284 WD40 0.009 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1284 - - qsu:111995984 1225.31