Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1282 ATGGATACCAATGCACTCAAAGATGGAAACTTTGTCGAAAACGAGCAATCAGAAATCTCCGAGTCCTTTGTTTGTTGTTTTTGCCTGGATCTATTGTACAAGCCCATTGTGCTACCTTGTGGCCACATATCTTGTTTCTGGTGTGTTCATAAATCAATGAATGGTGAACGCGAGTCTCATTGTCTAATTTGTGAGCATCCATACTATCACTTTCCGACCATCTGTCAAATGCTTCACTTTTTGCTTCTTAAGATGCATCCTGTTGCTTACAAGAGAAGGGAAAATCAGACGCTTGAGGAAGAAAAGAACATGGATTGTTTCTCCCCTCAACTTGATGCTTATGCATGTGGATCACAAGCTAAATTTGATCATCCTGGAAGTTCACCTTCCAGCACTACTAAAAAGCTGGTGTCCAGCTCAAGCAACTTGGAATCTTTTGAATGTATGGAGCAATCAGGGCCTGCAACACATGAAGGAAAAGAAGGTGCCATCTTATCTGTACACACATCCAACAAAACTCCTGAAGTTACTGAAACTCCTTCTGCTGAAGGCCCTTCTGTTGAAGGAAAAAAATTGCCTCAGAACAATGAGCACAATCAGCAACACAAAATATTACTTGCAGATGTGATGTGTACAAAGTGCAAGAAAATGCTCTTTCATCCTGTTGTTCTTAATTGTGGTCATGTATGCTGTGAAGTTTGCATCATCAACTTAGCTGATGAGATGCTTAGATGTCAAGTTTGTCGAAGTCCACATCCAAGAGGCTTTCCAAAAGTTTGTTTGGCCCTTGATCACTTTTTGGAGGGACAATTTCCAGAAGAATATGCAGAGAGAAGAGATGCTGTTCAACTCAGCCAAATCAAAGTCAAACCTGAGACCTCATCTTGTTCATTGGATGATGGTGAAGGAGAAAAGATAAACTGGTGGTCTGGTCCTGGGTTGAAAGTTCACAGATTCGCTGGTTGTGATTTTTGTGGGATGTACCCAATAATTGGGGATAGATACAGGTGCATTGACTGTACAGAGAAGATGGGTTTTGATCTTTGTGGCGATTGCTATAACACGCGCTCAAAGCTTCCAGGCCGATTTAATCAGCAGCACACCCCTGAGCACAAGTTTGAGCTTGTACAAGCTTCGGGGGCGAGACAGAGCTATGTACAAGTGTCTCTTGAAAATTTAGAACTCATATCCAAAGATCCCGGTTTGGCTGAAGAAGATAACCGGAATGAATCCGAAGCCGCCAACTGA 1248 0.4223 MDTNALKDGNFVENEQSEISESFVCCFCLDLLYKPIVLPCGHISCFWCVHKSMNGERESHCLICEHPYYHFPTICQMLHFLLLKMHPVAYKRRENQTLEEEKNMDCFSPQLDAYACGSQAKFDHPGSSPSSTTKKLVSSSSNLESFECMEQSGPATHEGKEGAILSVHTSNKTPEVTETPSAEGPSVEGKKLPQNNEHNQQHKILLADVMCTKCKKMLFHPVVLNCGHVCCEVCIINLADEMLRCQVCRSPHPRGFPKVCLALDHFLEGQFPEEYAERRDAVQLSQIKVKPETSSCSLDDGEGEKINWWSGPGLKVHRFAGCDFCGMYPIIGDRYRCIDCTEKMGFDLCGDCYNTRSKLPGRFNQQHTPEHKFELVQASGARQSYVQVSLENLELISKDPGLAEEDNRNESEAAN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1282 415 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Dod07g1282 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 13 385 - -
Dod07g1282 415 ProSiteProfiles Zinc finger ZZ-type profile. 317 381 IPR000433 GO:0008270
Dod07g1282 415 SUPERFAMILY RING/U-box 203 252 - -
Dod07g1282 415 SUPERFAMILY RING/U-box 15 75 - -
Dod07g1282 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Dod07g1282 415 Pfam Zinc finger, C3HC4 type (RING finger) 24 68 - -
Dod07g1282 415 Pfam Zinc finger, ZZ type 320 357 IPR000433 GO:0008270
Dod07g1282 415 PANTHER UNCHARACTERIZED 13 385 - -
Dod07g1282 415 SUPERFAMILY RING/U-box 309 376 - -
Dod07g1282 415 SMART ring_2 211 248 IPR001841 -
Dod07g1282 415 SMART ring_2 25 64 IPR001841 -
Dod07g1282 415 MobiDBLite consensus disorder prediction 169 197 - -
Dod07g1282 415 ProSiteProfiles Zinc finger RING-type profile. 211 249 IPR001841 -
Dod07g1282 415 Gene3D - 314 376 IPR043145 -
Dod07g1282 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 280 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1282 Dod-Chr7 34272377 34287857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1282 10 65 C3H Transcription Factor Family AT1G74990 38.596 4.20e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1282 - - aprc:113868764 540.421