LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1248	ATGTTTGGTTCAAAGATGTCGATTTTAGCAACAGATATGAATGTTGTTCTCTGTCTGCAGTCCCTTTGTTTCTTCCTTTTAGCTATACCTTTCATTAAAGCTTCAGAATTAAATGTACAAGCCTATGAATCCGATAGAATAATTGATCTTCCTGGCCAACCTTCAAGTCCATCGGTGTCACAATTTTCAGGACCTGGATGCTCCTCAATTGGGAATGGTGCAGTTGTTGAGATAGGACCTCTTGCAGTCAACAAAAATGGCGAAGGACTGCATTTCAATACATATGCCTGGAATCAAGAAGCAAATTTATTATTCGTGGAGTCTCCTGTTGGAGTTGGTTTCTCTTACACCAACACATCTTCTGATCTTACAATATTAGAGGATAGTTTTGTTGCTGAGGATGCTTACAATTTCTTGGTAAATTGGCTACAAAGATTCCCACAATTCAAAACCCGGGACTTCTTTATAGCAGGAGAAAGCTATGCTGGCCACTATGTCCCTCAGCTTGCAGAGCTAGTATTTGATCGAAATAAGGATAGAAACAAATACCCTTTTATTAATCTTAAAGGTTTTATTGTGGGGAATCCAGAAACTGAGAATTACTATGATTACAAAGGCCTGCTAGAATATGCATGGAGCCATGCAGTTATATCAGACCAACAGTACGACAAAGCAAAACAAGTATGTGATTTCAAACAATTCGATTGGTCCAATGAATGCAACCAGGTCATGAATGAAGTCTTCCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGGCATGCCGTCTAAATAGCTCATCCTCAATAGCTGGAGATGGTGACAGTAATGACCCTACAAAGATGAGAAATAATTATGGAATAAGGAGAATGAGAATTTTTGGGGGATATGACCCTTGTTATTCCACATATGCAGAAGAATATTTCAATAGGATAGATGTTCAGTCATCTTTTCATGCAAATATTAGAGGAGAAAACACTAGTGTAACGTGGAAGACTTGTAACGATTCCATATTGAGGACTTACAACTTCACTGTCTTTTCTGTCCTACCCATCTACACCAAACTCATTAAGGGTGGGCTTAAGATATGGATTTACAGTGGAGATGCAGATGGCAGAGTACCTGTGACAGGGACACGATACTGCGTTGAGGCTCTCGGATTAGCTCTCAAGTCTAGTTGGCGGTCATGGTACCACAATGATCAGGTTGGAGGAAGGATTGTGGAGTATGAAGGGCTAACGTATGTGACAGTGAGAGGAGCTGGTCACTTGGTGCCTCTCAACAAGCCCAGTGAGGCGCTCTCCCTAATTCATTCTTTCCTAACAGGCGACCATCTCCCTACTCGGCCATGA	1359	0.4091	MFGSKMSILATDMNVVLCLQSLCFFLLAIPFIKASELNVQAYESDRIIDLPGQPSSPSVSQFSGPGCSSIGNGAVVEIGPLAVNKNGEGLHFNTYAWNQEANLLFVESPVGVGFSYTNTSSDLTILEDSFVAEDAYNFLVNWLQRFPQFKTRDFFIAGESYAGHYVPQLAELVFDRNKDRNKYPFINLKGFIVGNPETENYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQFDWSNECNQVMNEVFQDYSEIDIYNIYAPACRLNSSSSIAGDGDSNDPTKMRNNYGIRRMRIFGGYDPCYSTYAEEYFNRIDVQSSFHANIRGENTSVTWKTCNDSILRTYNFTVFSVLPIYTKLIKGGLKIWIYSGDADGRVPVTGTRYCVEALGLALKSSWRSWYHNDQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSLIHSFLTGDHLPTRP*	453

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g1248	452	Gene3D	-	302	340	-	-
	Dod07g1248	452	PRINTS	Carboxypeptidase C serine protease (S10) family signature	142	167	IPR001563	GO:0004185\|GO:0006508
	Dod07g1248	452	PRINTS	Carboxypeptidase C serine protease (S10) family signature	106	116	IPR001563	GO:0004185\|GO:0006508
	Dod07g1248	452	PRINTS	Carboxypeptidase C serine protease (S10) family signature	93	105	IPR001563	GO:0004185\|GO:0006508
	Dod07g1248	452	PRINTS	Carboxypeptidase C serine protease (S10) family signature	415	428	IPR001563	GO:0004185\|GO:0006508
	Dod07g1248	452	ProSitePatterns	Serine carboxypeptidases, histidine active site.	415	432	IPR033124	GO:0004185
	Dod07g1248	452	Gene3D	-	351	445	-	-
	Dod07g1248	452	ProSitePatterns	Serine carboxypeptidases, serine active site.	156	163	IPR018202	GO:0004185
	Dod07g1248	452	Gene3D	alpha/beta hydrolase	41	266	IPR029058	-
	Dod07g1248	452	SUPERFAMILY	alpha/beta-Hydrolases	49	446	IPR029058	-
	Dod07g1248	452	Pfam	Serine carboxypeptidase	64	444	IPR001563	GO:0004185\|GO:0006508
	Dod07g1248	452	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	64	450	-	-
	Dod07g1248	452	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	64	450	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g1248	Dod-Chr7	33009305	33013986	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod07g1248	333	448	Calmodulin-binding Proteins	AT2G22960	30.769	1.19e-12	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1248	K16297		-	gmx:100792930	773.467