Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1246 ATGAATGCCTCTTTCCCTCCCCTACTTGTTAGGAACAAACATACCGTCATTTCACTAGCTACCACACCACCAATGAGTTCTCCTTCTGGTCTTGTCACCAAGCCATCACTACCACCAACACCACCACCTTCTTCTGAGTCCCTTGATGGCTTGAAATTTGGCCAAAAAATATACTTTGAGGATGGTACCCTTGCAAGTACTACTATTACTGAGGTCAAAACCACTCCCTCATCATCAGGGCCAACAAAGAAGGGAAGAGTTGGTAGTACTGTTCAGGCAGCTCAGCCTCCAAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGATGCAAAGGCTTACTATTCTCGGCATAAAGTTTGTGGCATGCACTCTAAATCCCGTACTGTCACTGTTGCTGGCCTGGAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGACCAAGGAAAAAGAAGTTGCCGTAGGAGACTAGCTGGCCATAATGAACGTCGCAGGAAGCCCCCACCAAGCTCCTTGTTAACCTCTAGTTATGCCAAACTTTCGTCGCCTATTTTTGGCAGAGGTGGTGGCTTTCTCATGGAATTTGCTTCGTACCCAAAGCTCACTGCACGAAATGTGTTGCCAACTCCAAAATCATCTCAGCCAGTTTCTGAGAATCAAACTGCAACACTGACCTGGCAGGCCAACTCAGAGACACCATCTGACTTTTTCCTGCAAGGGTCAGTGGGCGGGACAAGCTTCCCTGGTCCCAGACATCCTCCCGTCGAAACTTACACTGGAGTCACTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTCCTAGAAACATGGCACCAAGTGTTGAGCTGAACAACCTGTTCAATTTCAATGGGACACCCATGACACAACTCGCTGCGACGCCTCATGTTGCAGCTGTCCATCAACTTCCGAATGCCTTGTGGTGTTTCAAGGGCATTGACTCTGGTAACTTTTTGCATGAGGTTGGCCCTGATATCGGTCTGGGTCAAAATCCACAGCCGCCTCATACCCATCTTCCTGGTGAGCTTGAAGTGTCACAACAAGGCAGGAGGCTTTACATGGATCTTGGGCAAACCAGGGCCTATGAATCTCCTCAATGGTCACGTTAA 1158 0.4836 MNASFPPLLVRNKHTVISLATTPPMSSPSGLVTKPSLPPTPPPSSESLDGLKFGQKIYFEDGTLASTTITEVKTTPSSSGPTKKGRVGSTVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSRTVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSSYAKLSSPIFGRGGGFLMEFASYPKLTARNVLPTPKSSQPVSENQTATLTWQANSETPSDFFLQGSVGGTSFPGPRHPPVETYTGVTDSSCALSLLSSQTWGPRNMAPSVELNNLFNFNGTPMTQLAATPHVAAVHQLPNALWCFKGIDSGNFLHEVGPDIGLGQNPQPPHTHLPGELEVSQQGRRLYMDLGQTRAYESPQWSR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1246 385 Pfam SBP domain 99 172 IPR004333 GO:0003677
Dod07g1246 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 28 381 - -
Dod07g1246 385 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Dod07g1246 385 MobiDBLite consensus disorder prediction 20 49 - -
Dod07g1246 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 381 IPR044817 GO:0003677
Dod07g1246 385 SUPERFAMILY SBT domain 97 178 IPR036893 GO:0003677|GO:0005634
Dod07g1246 385 MobiDBLite consensus disorder prediction 69 91 - -
Dod07g1246 385 Gene3D - 89 160 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1246 Dod-Chr7 32891553 32896434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1246 51 380 SBP-box Gene Family AT2G42200 43.978 4.38e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod07g1246 SBP 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1246 - - gmx:100780949 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2311 01 61232588 61237146 Dod07g1246 07 32891553 32896434 PCT