LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1246	ATGAATGCCTCTTTCCCTCCCCTACTTGTTAGGAACAAACATACCGTCATTTCACTAGCTACCACACCACCAATGAGTTCTCCTTCTGGTCTTGTCACCAAGCCATCACTACCACCAACACCACCACCTTCTTCTGAGTCCCTTGATGGCTTGAAATTTGGCCAAAAAATATACTTTGAGGATGGTACCCTTGCAAGTACTACTATTACTGAGGTCAAAACCACTCCCTCATCATCAGGGCCAACAAAGAAGGGAAGAGTTGGTAGTACTGTTCAGGCAGCTCAGCCTCCAAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGATGCAAAGGCTTACTATTCTCGGCATAAAGTTTGTGGCATGCACTCTAAATCCCGTACTGTCACTGTTGCTGGCCTGGAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGACCAAGGAAAAAGAAGTTGCCGTAGGAGACTAGCTGGCCATAATGAACGTCGCAGGAAGCCCCCACCAAGCTCCTTGTTAACCTCTAGTTATGCCAAACTTTCGTCGCCTATTTTTGGCAGAGGTGGTGGCTTTCTCATGGAATTTGCTTCGTACCCAAAGCTCACTGCACGAAATGTGTTGCCAACTCCAAAATCATCTCAGCCAGTTTCTGAGAATCAAACTGCAACACTGACCTGGCAGGCCAACTCAGAGACACCATCTGACTTTTTCCTGCAAGGGTCAGTGGGCGGGACAAGCTTCCCTGGTCCCAGACATCCTCCCGTCGAAACTTACACTGGAGTCACTGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTCCTAGAAACATGGCACCAAGTGTTGAGCTGAACAACCTGTTCAATTTCAATGGGACACCCATGACACAACTCGCTGCGACGCCTCATGTTGCAGCTGTCCATCAACTTCCGAATGCCTTGTGGTGTTTCAAGGGCATTGACTCTGGTAACTTTTTGCATGAGGTTGGCCCTGATATCGGTCTGGGTCAAAATCCACAGCCGCCTCATACCCATCTTCCTGGTGAGCTTGAAGTGTCACAACAAGGCAGGAGGCTTTACATGGATCTTGGGCAAACCAGGGCCTATGAATCTCCTCAATGGTCACGTTAA	1158	0.4836	MNASFPPLLVRNKHTVISLATTPPMSSPSGLVTKPSLPPTPPPSSESLDGLKFGQKIYFEDGTLASTTITEVKTTPSSSGPTKKGRVGSTVQAAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSRTVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSSYAKLSSPIFGRGGGFLMEFASYPKLTARNVLPTPKSSQPVSENQTATLTWQANSETPSDFFLQGSVGGTSFPGPRHPPVETYTGVTDSSCALSLLSSQTWGPRNMAPSVELNNLFNFNGTPMTQLAATPHVAAVHQLPNALWCFKGIDSGNFLHEVGPDIGLGQNPQPPHTHLPGELEVSQQGRRLYMDLGQTRAYESPQWSR*	386

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Dod07g1246	385	Pfam	SBP domain	99	172	IPR004333	GO:0003677
Dod07g1246	385	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17	28	381	-	-
Dod07g1246	385	ProSiteProfiles	Zinc finger SBP-type profile.	96	173	IPR004333	GO:0003677
Dod07g1246	385	MobiDBLite	consensus disorder prediction	20	49	-	-
Dod07g1246	385	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	28	381	IPR044817	GO:0003677
Dod07g1246	385	SUPERFAMILY	SBT domain	97	178	IPR036893	GO:0003677\|GO:0005634
Dod07g1246	385	MobiDBLite	consensus disorder prediction	69	91	-	-
Dod07g1246	385	Gene3D	-	89	160	IPR036893	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g1246	Dod-Chr7	32891553	32896434	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod07g1246	51	380	SBP-box Gene Family	AT2G42200	43.978	4.38e-68	218

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Dod07g1246		SBP	9.3e-32	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1246	-		-	gmx:100780949	499.204

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod01g2311	01	61232588	61237146	Dod07g1246	07	32891553	32896434	PCT

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