Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1212 ATGCATTCAAATACACTTCATGGTTATCATCAACCACAGCAGCACCATCAACACAATTCAGGGTTGCTACGTTTTCGCTCAGCGCCGAGTTCACTTCTCGCGAATCTCACACCACCACCACCTTGTGGTGAATCCGAAGGGTTGGTTTCGGGATTTGTGAGTTACGGCACTGATAATAATAATAATAATAGCAGCAGCAGCAACGACAGCGTTTCACCTAGCTTCCGAGAATTCGAAGAAAACATCATCAACAACAACAACAACAAGGGTTGCAATTCTAAGGGTGTGAGTCTTATGAATTCTCACCAGCATGGGTATGGTGTTGGGTTGCCACCTCACTACCCGAGGCATGGTTCTTCTGCTTTGGATGATGGCTCGTATGGGTTGGTGGGTGGTTCAATGGGAATGGAAAAGCACAAGGGATTTGGTTCTTCTTCTTCTTCCAATCTTCTCAGACAGAGTAGCTCCCCTGCTGGCATTTTCTCCAACAATATTTCCTTTGAAAATGGGTTTGGCACCATGAAAGGTGTTGGAAACTATGCTGCGGCTAATGGCAGTAATGGTGAACTTAGTCCATCAATTAACAGATTGAAGAATCAGATCAGCTTCTCATCAAGAAGTGGTTCTTCCCTGGGAATGTTGTCACAGATCTCTGAAATAGGGAGCGAAGAGATTGGGGCAACTAGCCCTGATGATGGGAGGCAGGGAGGTAGCAATGGTGATGCTCCGCATTATGGCCCTGGGTTCCCCTATGTTTCTTGGAATGATACTCCACAACTCTCTGAAAATCTCGCTGGCTTGAAAAGAGGGCAAAATACCAACGAAAAAATATTTTCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATGTACTATCACATCACTTGAGTTTGCCAAAAACTTCATCAGAAATGATTGGTATGGAGAAGTTGCTTCAGTTCCCAGGTTCTGTACCTTGTAAAATCAGAGCAAAGCGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAGCGAATGAGAAAACTACAAGAGCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAAAAACAATTCAAGGTGCATAAGGATAGAATTTGA 1173 0.4425 MHSNTLHGYHQPQQHHQHNSGLLRFRSAPSSLLANLTPPPPCGESEGLVSGFVSYGTDNNNNNSSSSNDSVSPSFREFEENIINNNNNKGCNSKGVSLMNSHQHGYGVGLPPHYPRHGSSALDDGSYGLVGGSMGMEKHKGFGSSSSSNLLRQSSSPAGIFSNNISFENGFGTMKGVGNYAAANGSNGELSPSINRLKNQISFSSRSGSSLGMLSQISEIGSEEIGATSPDDGRQGGSNGDAPHYGPGFPYVSWNDTPQLSENLAGLKRGQNTNEKIFSDVQNGELGNQVHVLSHHLSLPKTSSEMIGMEKLLQFPGSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKVHKDRI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1212 390 CDD bHLH_AtbHLH_like 334 385 IPR045239 -
Dod07g1212 390 MobiDBLite consensus disorder prediction 32 54 - -
Dod07g1212 390 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 388 - -
Dod07g1212 390 MobiDBLite consensus disorder prediction 224 249 - -
Dod07g1212 390 PANTHER TRANSCRIPTION FACTOR BHLH130 14 388 - -
Dod07g1212 390 Pfam Helix-loop-helix DNA-binding domain 334 380 IPR011598 GO:0046983
Dod07g1212 390 Gene3D - 326 389 IPR036638 GO:0046983
Dod07g1212 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 387 IPR036638 GO:0046983
Dod07g1212 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 379 IPR011598 GO:0046983
Dod07g1212 390 SMART finulus 335 385 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1212 Dod-Chr7 31716027 31718584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1212 20 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.000 4.51e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod07g1212 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1212 - - aip:107625483 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1212 07 31716027 31718584 Dod07g1212 07 31716027 31718584 ECH
Dod07g1212 07 31716027 31718584 Dod10g1787 10 39051701 39055429 ECH
Dod07g1212 07 31716027 31718584 Dod03g3010 03 62433953 62438505 ECH
Dod01g2291 01 60849117 60851546 Dod07g1212 07 31716027 31718584 PCT