Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1194 ATGAACCACTTGACTATTGAGATTGAGACTGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCCAATAACGATGTTGAAGGTTTCAAACGATCAATTGAGCAGAGTCCTTCTTGTGCGGATGAGGTAGGGATATGGTACAGTCGTCGGAAGGGATCAAAGCGGATGGCCAATGAAATCAGAACGCCTTTGATGGTTGCTGCTACTTATGGAAGCATTGATGTTATGAAACTGATTCTTTCGCTGTCCGATTATGACATTAATCGCTCTTGTGGCCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCTGGTGGGGCTATAAATGTTGTTGATGTTGTGAAACTGCTTCTAGCAGCAGGGGCTGATCCCAATTCTGTGGATGACAATGGTCATCGTCCAGTTGATGTTATTGTGGTTCCTCCTAAGCTTGTACATGTTAAAACCAGTCTAGAAGAACTTCTTCAAACTGATGATATCATTGCAGGATGTAATGTTAGAGTGGTCACGGCCCCATCAAACACATATTCTCCACCTTTATCAGCTTCTCCAGAGAATGGGTCTCCTGCACCAGATTTTGAATTGATATCCAAGTTGAATGATGTCCTTGTATCCTCTGCGACAGAGAAGAAAGAATATCCTGTTGATCCTTCCCTGCTGGATATCCAGAATAGCATATATTCAACTGATGAATTCCGGATGTATTTTTTCAAGGTCCGTTTTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCTTATGTTCATCCTGGGGAGAATGCTCGAAGAAGGGACCCAAGAACGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGCAAGGGTGCTTGTCGACGTGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGAGCTGGCTGCATCCAGCTCAATATCGAACTCGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTGTGCTTCTTTGCTCACGTTGTTGAGGAGCTTCGGCCATTATATGTGTCAACTGGTTCTGCGGTTCCATCTCCTCACTCAAGCACATCTTCTGCTATGGATTTTGCTGCAGCAATGAGCCGGATACCTGGTTCTCCTTCTTCAATGAGTGTCATGTCCCCTTCTCCATTCACTCTGCCTATGTCTCCCTCTGCCAATGGCATGTCAAACTCTTCTGCTGCTTGGCCTCAACCAAATGTCCCAGCCTTGCATCTGCCAGGAAGTAATCTTCATTCCAGTCGTTTGAGATCTTCACTCAATGCTAGATATATTCCTGCAGATGACTTTGACTTGTTGCGTGACTATGATGTTCAGCAGCAACAGCTCCTTAATCAGTTATCTTGCCTTTCTCCACTGCCTATGAATTCTAATACTATGAACCATGCCGGTCGCATGAAAAACCTGACCGCTTCAAATCTTGATGATATCTTTTCTGCTGAGAGTTCTTCTCCTCGGTTTTCTGATTCACCTCTGGCTTCATCTTTTTTTTCTCCTACACACAAATCAGCTGTCTATAATCCATTTCAGCACCAGCGAAGTTTGCTGTCACCTGTGAATACAAACTTCTCTTCTAAGAATGTTGAGCATGCTTTATTGCATACCTCTTTTGGGGTTCAGATGTCAGGAAGGATGTCTCCGAGAAATATGGAACCTATTTCTCCAATGAGCTCTAGGATTTCGACGTTAGCTCAGTGTGAGAAGCAGCAACAATTTCGTAGCCACAGCTTCCGGGAACTTGGCTGCAACTCTTCTGCTGCTGCTGCTGGCGCCCCAGTTGATTCTTGGTCAAAATGGGGATCATCCAATGGCACATTGGATTGGGCTGCCGGTGCTGACGAATTAGGTACGCTCCGTAGATCGTCTTCTTTTGAGCTTGGGAATAATGGTGATGAGCCTGATTTAACATGGGTTCAGTCACTTGTTAAAGAGTCTCCGTCTGAGATTAAGGAAAAGTTGGAACAACGGTCTGGAGTGTTGCAGCAGCTGCTGGATCCTCCATTGAGGGATCAAATATGA 2019 0.4497 MNHLTIEIETEDSFASLLELAANNDVEGFKRSIEQSPSCADEVGIWYSRRKGSKRMANEIRTPLMVAATYGSIDVMKLILSLSDYDINRSCGLDKSTALHCAASGGAINVVDVVKLLLAAGADPNSVDDNGHRPVDVIVVPPKLVHVKTSLEELLQTDDIIAGCNVRVVTAPSNTYSPPLSASPENGSPAPDFELISKLNDVLVSSATEKKEYPVDPSLLDIQNSIYSTDEFRMYFFKVRFCSRAYSHDWTECPYVHPGENARRRDPRTYHYSCVPCPDFRKGACRRGDMCEYAHGVFESWLHPAQYRTRLCKDGTSCSRRVCFFAHVVEELRPLYVSTGSAVPSPHSSTSSAMDFAAAMSRIPGSPSSMSVMSPSPFTLPMSPSANGMSNSSAAWPQPNVPALHLPGSNLHSSRLRSSLNARYIPADDFDLLRDYDVQQQQLLNQLSCLSPLPMNSNTMNHAGRMKNLTASNLDDIFSAESSSPRFSDSPLASSFFSPTHKSAVYNPFQHQRSLLSPVNTNFSSKNVEHALLHTSFGVQMSGRMSPRNMEPISPMSSRISTLAQCEKQQQFRSHSFRELGCNSSAAAAGAPVDSWSKWGSSNGTLDWAAGADELGTLRRSSSFELGNNGDEPDLTWVQSLVKESPSEIKEKLEQRSGVLQQLLDPPLRDQI* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1194 672 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Dod07g1194 672 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Dod07g1194 672 SUPERFAMILY Ankyrin repeat 8 139 IPR036770 -
Dod07g1194 672 SMART ANK_2a 94 126 IPR002110 GO:0005515
Dod07g1194 672 SMART ANK_2a 59 89 IPR002110 GO:0005515
Dod07g1194 672 ProSiteProfiles Ankyrin repeat region circular profile. 94 129 - -
Dod07g1194 672 Gene3D - 271 334 - -
Dod07g1194 672 ProSiteProfiles Ankyrin repeat profile. 94 129 IPR002110 GO:0005515
Dod07g1194 672 Gene3D - 10 157 IPR036770 -
Dod07g1194 672 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Dod07g1194 672 Pfam Ankyrin repeats (3 copies) 60 128 IPR002110 GO:0005515
Dod07g1194 672 PANTHER UNKEMPT FAMILY MEMBER 1 657 IPR045234 -
Dod07g1194 672 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Dod07g1194 672 PRINTS Ankyrin repeat signature 95 110 IPR002110 GO:0005515
Dod07g1194 672 PRINTS Ankyrin repeat signature 113 127 IPR002110 GO:0005515
Dod07g1194 672 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1194 Dod-Chr7 31010272 31013927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1194 9 647 C2H2 Transcription Factor Family AT5G12850 52.287 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod07g1194 Ank_2 4.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1194 - - gmx:100813554 1018.45