Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1108 ATGTCAAGTAGCAGGAACACTCATTGGTGTTATAGTTGCCAGAGGCCAGTTCGACTGGGACAGAGAGATACAGTTTGCCCTAGCTGTAATGAGGGGTTTGTTCAGGAACTTAATGATATGGTGCACATTAACCCTCTCGAATTCTTTGGACTGGACAACAATGAAGAGCATGACCAAAGATTCGGACTCATGGAAACTTTCTCAGCCTTTATGAGGCAGCGAATGGCAGATAGAAGTCGTGGCAATGATATCAGGGTGCGATCGGATTCAATTCCTGAACACAGTCCAGGTTTTGCTCCTTTGTTGATCTTTGGCGGTCAGATTCCTTTCAGGTTGTCTGGACATGGTGGCTTTGAAGCTCTCTTTAATGGCACTCCAGGAATTGGTCTAACACGAGGTAACACAGGTGATTATTTTGTTGGTCCTGGACTGGAAGAACTGTTTGAACAGCTCTCAGCTAATAGCCGGCAAGGCCCCCCACCGGCATCCAGATCCTCTATAGATGCAATGCCAACTATCAAGATAACACAGAGGCATCTTCGCTCAGAATCACATTGTCCAGTATGCAAAGATAGATTCGAGCTGGGGTCTGAAGCAAGACAAATGCCATGTAACCATCTGTATCACTCAGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCACCTCAAGGATTGAGTAGTAGCCGAGGCTCGAATGGTCGAAGTAGAAGCAGTTTTAGTACCAGTGCCAACGGAAGTAGTGGTAGGGAGAGCCAGGTAAGGCGAAATCCGTTTTCCTTTTTGTGGCCTTTCCGTTCATCCAATTCTAGTTCTAGCCGTAATGATGGAGCAACCGAAAGCAGCTCACCAACGCCATCATCATTCCCTGACAATAGTCATCACACTGGGTATTCTGGGTGGCCATTTGAATGA 942 0.4671 MSSSRNTHWCYSCQRPVRLGQRDTVCPSCNEGFVQELNDMVHINPLEFFGLDNNEEHDQRFGLMETFSAFMRQRMADRSRGNDIRVRSDSIPEHSPGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFVGPGLEELFEQLSANSRQGPPPASRSSIDAMPTIKITQRHLRSESHCPVCKDRFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSSRGSNGRSRSSFSTSANGSSGRESQVRRNPFSFLWPFRSSNSSSSRNDGATESSSPTPSSFPDNSHHTGYSGWPFE* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1108 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 293 - -
Dod07g1108 313 SMART ring_2 186 226 IPR001841 -
Dod07g1108 313 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Dod07g1108 313 MobiDBLite consensus disorder prediction 271 304 - -
Dod07g1108 313 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Dod07g1108 313 SUPERFAMILY RING/U-box 166 233 - -
Dod07g1108 313 MobiDBLite consensus disorder prediction 232 264 - -
Dod07g1108 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 293 - -
Dod07g1108 313 CDD RING-H2_RNF126_like 186 227 - -
Dod07g1108 313 MobiDBLite consensus disorder prediction 232 313 - -
Dod07g1108 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Dod07g1108 313 Pfam Ring finger domain 185 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1108 Dod-Chr7 23062082 23063023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1108 121 231 C3H Transcription Factor Family AT5G01980 46.087 3.34e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1108 K11982 - gmx:100787523 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g1108 07 23062082 23063023 Dod07g1108 07 23062082 23063023 ECH