Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1092 ATGCGGACACATATCAGCAAATCTGGATGCATAGGTGTTGATTCCCTGAAGAGAGTTAAAGATGGTGAGAGGAAAGACTTAGATAAGGAGTATAGAAAATGCAATAACAGACAAGTCACCTTCTCAAAGAGGTGTAATGGGCTGCTGAAGAAGGCCTTTGAGCTTTTAATTCTTTGTGATGTTGAGGTTACTCTTATCATCTTCTCCCCAAGGGGGAAGCTTTATGAATTTGCTAGCTCCAG 242 0.4132 MRTHISKSGCIGVDSLKRVKDGERKDLDKEYRKCNNRQVTFSKRCNGLLKKAFELLILCDVEVTLIIFSPRGKLYEFASS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1092 80 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Dod07g1092 80 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Dod07g1092 80 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Dod07g1092 80 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Dod07g1092 80 PANTHER MADS-BOX PROTEIN SOC1 35 79 - -
Dod07g1092 80 Gene3D - 34 80 IPR036879 GO:0003677|GO:0046983
Dod07g1092 80 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 77 IPR002100 GO:0003677|GO:0046983
Dod07g1092 80 SUPERFAMILY SRF-like 31 80 IPR036879 GO:0003677|GO:0046983
Dod07g1092 80 ProSiteProfiles MADS-box domain profile. 21 80 IPR002100 GO:0003677|GO:0046983
Dod07g1092 80 PANTHER MADS BOX PROTEIN 35 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1092 Dod-Chr7 21885444 21897136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1092 34 80 MADS-box Gene Family AT2G45660 80.851 1.55e-22 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod07g1092 SRF-TF 3.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1092 - - egr:104442219 81.6481