Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1076 ATGGAGATCACACAGCGTCGCCTTTCCCCAACCAAAACCCTTCTTCAAGAATTCTTCAAAGTTTTCATGCCCGACACAAGCTCTACCCACTTGCGCTTACCAAAGGCTTTCACCAGATTCTTCAATGGAATCACACCAAGCAAGGCCACTCTTGTAGACCATGATGATGGAAACTCGTGGGATATTGGGTTGGAGAAAATGAAGGATGGCTTCTTGGTTCTCAAAAAGGGGTGGAAGCAGTTTGCCAGGGACAAGTGTTTAGAAGAGGCAGACTTCTTGCTTTTTGAGTACGATGGCAAGTCCACCTTCTACGTGAAGATATTCTCCAAAAGTGGAATCAGGAAAGAGCCTGCAAATGGTGGAAAACATGTCCCCATTGTGATCTTGGATGAAGATTCTGATCAGATGAGTTGTAGGAAAACGCAGCGGGGTCTTAAACGGAAACGTTCACCAACCACACTCAAAATAATCGAGAAACCTGATTCGGAAGTGCATACTTTTGTAGGCCCATCTGAAGGAACTCGGGGCAAAATAAAAAAAGCTGCTGAAGCAAAACGTAACGACGACTATGAGAAGAAGACAACTGGTCTTGCAAAGCGTGTTCCGTTCAGGAACCCTCATTTTGTGATACCTTATTCTCACTGGAGAATGACAAGAATGGAACTTCCTAAATTAATACTGAGGCAATTGAATATCAGGCTGACATCAGAGATTAGTCTGAGAGACGAGAATGACAAACTATGGCCGGTGAAGATCATTACCACCAACACGTGGGGCCGTATCTTTTTGGCCAATGGATGGTCTGATTTCCAGAAGGCTAAAAATATTAAAGAAGGGCAGCTGTGTGCTTTCAAGTTTGTAATTGGCAAAGAAAATGTGGCTGAAGAGCTGCTTGTTCGTATAAGTGCACCAAAGTGA 918 0.439 MEITQRRLSPTKTLLQEFFKVFMPDTSSTHLRLPKAFTRFFNGITPSKATLVDHDDGNSWDIGLEKMKDGFLVLKKGWKQFARDKCLEEADFLLFEYDGKSTFYVKIFSKSGIRKEPANGGKHVPIVILDEDSDQMSCRKTQRGLKRKRSPTTLKIIEKPDSEVHTFVGPSEGTRGKIKKAAEAKRNDDYEKKTTGLAKRVPFRNPHFVIPYSHWRMTRMELPKLILRQLNIRLTSEISLRDENDKLWPVKIITTNTWGRIFLANGWSDFQKAKNIKEGQLCAFKFVIGKENVAEELLVRISAPK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1076 305 CDD B3_DNA 18 109 IPR003340 GO:0003677
Dod07g1076 305 Gene3D - 187 302 IPR015300 -
Dod07g1076 305 ProSiteProfiles B3 DNA-binding domain profile. 205 305 IPR003340 GO:0003677
Dod07g1076 305 PANTHER B3 DOMAIN-CONTAINING 16 292 - -
Dod07g1076 305 Pfam B3 DNA binding domain 18 110 IPR003340 GO:0003677
Dod07g1076 305 Pfam B3 DNA binding domain 215 290 IPR003340 GO:0003677
Dod07g1076 305 SUPERFAMILY DNA-binding pseudobarrel domain 17 112 IPR015300 -
Dod07g1076 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0723500-LIKE ISOFORM X1 16 292 - -
Dod07g1076 305 SMART B3_2 18 111 IPR003340 GO:0003677
Dod07g1076 305 SMART B3_2 208 305 IPR003340 GO:0003677
Dod07g1076 305 SUPERFAMILY DNA-binding pseudobarrel domain 204 287 IPR015300 -
Dod07g1076 305 ProSiteProfiles B3 DNA-binding domain profile. 16 111 IPR003340 GO:0003677
Dod07g1076 305 CDD B3_DNA 206 287 IPR003340 GO:0003677
Dod07g1076 305 Gene3D - 12 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1076 Dod-Chr7 21363256 21366232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1076 17 303 B3 DNA Binding Superfamily AT5G66980 31.935 1.38e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod07g1076 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1076 - - ahf:112695440 320.087