Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod07g1070 | ATGGCCATAGATTGCTTTTTTGTTGTATGGTTTGTCATGCGAAATGTTTGGATTTTCGGAGGACATGCATCTGTTGATGAAACTCCTAATTTGTACAGGTTATGTGTAGTGTTTCTTAGTTTTAGCTTTATCGGTTATGCCATGCCCTTCATTCTATGTGCAACAAGCTGCTGTCTGCCTTGTATAATTTCTTTCCTTGGGGTTAGAGAGGATCAGACACAAACCCGAGGCGCAACCTCTGAATCAATTGATGCTTTGCTAACTTACAAGTTCAAGATGAAGAAAAACAGAAGCAGGGATGAAAGCAACTCAAACGTCGATGAAGGTGGAATTTTGGCTGCGGGAACTGAAAAGGAACGAACAATATTCGGAGAAGATGCAGTTTGCTACATTTGCCTGGCCAAGTATGAAAATAACAATGAGTTGATAGAATTGCCTTGTTCTCATCTTTTCCACACAGAATGCATGGATAAGTGGTTGAAGATAAGTGCATTGTGCCTTATTTGCAAGAGTGAGGTTGGTGAGAATGTAACAGGATCGGTATCTGGGGAAAATGCAAACCATCAAAGGAGTGAAAGCAGGGTTGAGAATGGCCATGCCAATGCCTAA | 609 | 0.4122 | MAIDCFFVVWFVMRNVWIFGGHASVDETPNLYRLCVVFLSFSFIGYAMPFILCATSCCLPCIISFLGVREDQTQTRGATSESIDALLTYKFKMKKNRSRDESNSNVDEGGILAAGTEKERTIFGEDAVCYICLAKYENNNELIELPCSHLFHTECMDKWLKISALCLICKSEVGENVTGSVSGENANHQRSESRVENGHANA* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod07g1070 | 202 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 1 | 193 | - | - | |
| Dod07g1070 | 202 | SMART | ringv_2 | 128 | 170 | IPR011016 | GO:0008270 | |
| Dod07g1070 | 202 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 183 | IPR013083 | - | |
| Dod07g1070 | 202 | SMART | ring_2 | 129 | 169 | IPR001841 | - | |
| Dod07g1070 | 202 | MobiDBLite | consensus disorder prediction | 179 | 202 | - | - | |
| Dod07g1070 | 202 | Pfam | Ring finger domain | 129 | 170 | IPR001841 | - | |
| Dod07g1070 | 202 | PANTHER | C3H4 TYPE ZINC FINGER PROTEIN | 1 | 193 | - | - | |
| Dod07g1070 | 202 | SUPERFAMILY | RING/U-box | 121 | 176 | - | - | |
| Dod07g1070 | 202 | ProSiteProfiles | Zinc finger RING-type profile. | 129 | 170 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod07g1070 | Dod-Chr7 | 21015074 | 21016061 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod07g1070 | 1 | 180 | C3H Transcription Factor Family | AT1G80400 | 60.773 | 5.46e-77 | 234 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod07g1070 | - | - | gmx:100775815 | 320.857 |