Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1048 ATGAAGAAAAACAGAAGCAGGGGTGAAAGCAACTCCGATGTCAGTGAAGGTGGAATTTTGGCTATGGGAACTGAAAAGGAACGAACGATATCCGGAGAAGATGCAGTTTGCTGCATTTGCCTAGCCAAGTATGAAAACAATGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGAATGCATGGATAAGTGGTTGAAGATAAATGCATTATGCCCTATTTGCAAGAGTGAGGTTGGTGAGAGTGTAACAAGATCAGTATCTGGGGAGAATACAAACCAACAAAGGAGTGAAAGCAGGGTTCACAATGGCCACGCCAATGCCTAA 333 0.4294 MKKNRSRGESNSDVSEGGILAMGTEKERTISGEDAVCCICLAKYENNDELRELPCSHLFHKECMDKWLKINALCPICKSEVGESVTRSVSGENTNQQRSESRVHNGHANA* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1048 110 MobiDBLite consensus disorder prediction 1 25 - -
Dod07g1048 110 Pfam Ring finger domain 37 78 IPR001841 -
Dod07g1048 110 MobiDBLite consensus disorder prediction 82 110 - -
Dod07g1048 110 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Dod07g1048 110 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 102 - -
Dod07g1048 110 SMART ring_2 37 77 IPR001841 -
Dod07g1048 110 SUPERFAMILY RING/U-box 29 84 - -
Dod07g1048 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Dod07g1048 110 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 102 - -
Dod07g1048 110 SMART ringv_2 36 78 IPR011016 GO:0008270
Dod07g1048 110 MobiDBLite consensus disorder prediction 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1048 Dod-Chr7 19661226 19661856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1048 3 88 C3H Transcription Factor Family AT1G80400 58.621 2.24e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1048 - - gmx:100785559 184.111