Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1013 ATGGAGACTTCTTCTGCAAAATGGGCCCTCAATGCTTGTTTGTTGTTACTTCTGGTGCTGCTCATTGGAGAAGCCATGGCCACACCACACTTCTCTCAGCTCAGGAATGTTGAGGTTGAAACACAGAGGTTGCAGAGCTTGAAAAACTCTTCAATGGCGGCGAGGGCAAAAGAGGCTGAGAAATTAAATGAGCGTGCCGCCGTGGCTGACCCAGAGGAGGTGGTTTCCATGGTATCGATGAGAATCCAGAACAGCACAGAGAGAAGGAAGCTGGGGTTTTTCTCCTGCGGAACCGGCAACCCAATTGATGATTGCTGGCGTTGTGACCCAAACTGGCAACGTAACAGAAAGCGTCTCGCAGACTGCGGCATCGGCTTCGGCAGAAACGCCATCGGCGGCCGCGACGGCAAGTTCTACGTGGTCACCGACCCAGGAGACGATGACCCCGTCAACCCCAAGCCAGGCACATTGCGCCACGCCGTCATCCAGGACAGGCCACTGTGGATCGTGTTCAAGAGGGACATGGTGATACAGCTGAAGCAGGAGCTCATAATGAACAGCTTCAAGACCATTGACGGGAGAGGGGCCAATGTCCACATTGCCAATGGGGCATGCATCACGATCCAGTATGTCACCAATGTCATCATCCATGGCTTGCACATCCATGACTGCAAGCCCACCGGGAATGCCATGGTGAGGAGCTCCCCGACACACTTCGGTTGGAGGACAATGGCTGATGGGGATGCCATCTCCATATTTGGTTCCAGTCACATCTGGGTTGATCACAACTCCTTGTCCCATTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACTGCTATTACTATCTCTAACAACCACTTCACCCACCACAACGAGGTGATTCTGTTGGGCCACAGTGACTCTTACACAAGGGACAAGCAAATGCAAGTAACTATCGCGTACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCGCGGTGTAGACATGGGTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTACGCTATTGGTGGAAGTGCTGAGCCCACCATCAACAGCCAGGGCAATCGATACAATGCTCCAGCTAACCCATTTGCCAAAGAGGTGACTAAGAGAGTGGAAACAGCTGCATCAGCGTGGAAGGGCTGGAACTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGTGCTTATTTCACCCCATCTGGAGCTGGAGCTTCAGCCAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCATCTTCTATGGTTGGTTCCATGACTGCTAATGCTGGTGCAATTGGCTGCCGCAGAGGCCATCAGTGCTAG 1347 0.5226 METSSAKWALNACLLLLLVLLIGEAMATPHFSQLRNVEVETQRLQSLKNSSMAARAKEAEKLNERAAVADPEEVVSMVSMRIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYNAPANPFAKEVTKRVETAASAWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTANAGAIGCRRGHQC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1013 448 Pfam Pectate lyase 181 363 IPR002022 -
Dod07g1013 448 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Dod07g1013 448 Gene3D - 99 441 IPR012334 -
Dod07g1013 448 PANTHER PECTATE LYASE 18-RELATED 14 445 IPR045032 GO:0030570
Dod07g1013 448 PANTHER PECTATE LYASE 14 445 - -
Dod07g1013 448 SMART amb_all 174 371 IPR002022 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Dod07g1013 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1013 Dod-Chr7 18171886 18178214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1013 38 448 Polysaccharide Lyase AT4G13710 81.010 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1013 K01728 - gmx:100808253 824.698