Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1006 ATGGCTTCCCGAAAGGGTGACAATCCTCACTCCGGTGACGGTGCCAGTCCCGGGAAAATCTTCATTGGAGGGCTAGCCAAAGACACCACTTTGGATACTTTCGTTAAGTACTTTGAGAAGTACGGGGAGATAACGGACTCGGTGATCATGAAGGATCGGCACACGGGTCGGCCGAGGGGTTTTGGGTTCATAACCTACGCGGATCCTTCTGTTGTGGACCAGGTCATCCAGGAGGACCATGTCATCAATGGCAAGCAGGTTGAGATCAAAAGGACTATTCCTAAAGGTTCATCACAAGCTAATGACTTCAAAACAAAAAAGATTTTTGTTGGTGGTATTCCAACATCAGTGACTGAAGATGAGCTCAAGAACTTCTTCTCTAAGTATGGGAAAGTTGTGGAACATGAGATTATACGTGACCACACTACTAAACGTTCCCGGGGTTTTGGATTTATAGTTTTTGACAATGATAAGGTTGTTGATAATATGTTGGCAGATGGGAATATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCCGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCGTTTGCTAGTGACTCTAGGGCACTTTCTTACAATGATGGTTTTGGTGGATTTGGTGATTCTTATGGAAGTTTTGCTAGTAGCGGTTATGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGTGGTAGGCTTGGCAATTATGGTGGATATGGCGGTGGAGATGATTTTGGTGGTAGTTTTGGGGGTTACGGTGGTGGTGGTGCCGGGGGTGGCTATGCTGGTTATCGAGGAGAATCATCATTTGGCTACTCTAGTCGCTATGGTTCCTACATGGGGGGCCTTGGTGGTGGATATGGTGGCAGTGGCTTAGGTGCATATGGACGTGGTGGTGGTGCCTATGGAAGCTATGGTGGCCCAGGCACTGGCTCAGGTTATGAATCAGGACCTGGTGCTGGTTATGGTGGGGCGGGAGGAGGACTGTATGGTAGTAGGGGGGGTTATGGTGGCAGTAGTCGCTATCATCCTTATGCAAGATAG 1062 0.4774 MASRKGDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQEDHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVTEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNDKVVDNMLADGNMIDMAGTQVEIKKAEPKKSSNSASLPPFASDSRALSYNDGFGGFGDSYGSFASSGYGPASYRSLGGFGGRLGNYGGYGGGDDFGGSFGGYGGGGAGGGYAGYRGESSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGGGAYGSYGGPGTGSGYESGPGAGYGGAGGGLYGSRGGYGGSSRYHPYAR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1006 353 PANTHER OS08G0320100 PROTEIN 1 353 - -
Dod07g1006 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Dod07g1006 353 Gene3D - 18 96 IPR012677 -
Dod07g1006 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 353 - -
Dod07g1006 353 SUPERFAMILY RNA-binding domain, RBD 106 261 IPR035979 GO:0003676
Dod07g1006 353 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Dod07g1006 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 80 IPR000504 GO:0003723
Dod07g1006 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Dod07g1006 353 SMART rrm1_1 107 180 IPR000504 GO:0003723
Dod07g1006 353 SMART rrm1_1 19 90 IPR000504 GO:0003723
Dod07g1006 353 Gene3D - 97 215 IPR012677 -
Dod07g1006 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1006 Dod-Chr7 17817032 17819376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1006 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 26.415 3.84e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1006 K12741 - gmx:100801373 409.453