LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1000	ATGGATGCTAAGGACATCCTGGGATTGCCCAAGAACCCCTTCGCTTCTCAGGACAAGAAGTCTCGACCCCCAAAAGAGTCTCAGAGAAAACCTGATGGCATTTCCCGTGAGGTTTATGCGCTTACGGGTGGATTGGCTCCTCTTATGCCTGCTGTTGATTCGTCTCTTTTGAAAAAAAGGCCTCCGTCAGACGAAAAGATCACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTCATCATTGGGTCCGAGTTGTAAACAGTGCTCCACCAACTGGGGACTATTCTTTTGCTAAGTATAACAAGTGTGCTGACATTACAAAATACACAGATGAGGAGTATGAGAAGTATTTGACTGATCCCATGTGGACCAAGGAAGAGACAGATCAACTGTTTGACTTGTGCGAGAGGTTTGACCTCCGATTCATTGTAATAGCTGATAGGTTCCCATCATCTCGGACAGTAGAGGAATTAAAGGATCGGTATTATAGTGTATCTCAGGCTATGTTAAGTGCCAGGAATCCGTCTTTTGGGGACATTGGTGCACATTCTCTAGTTAAGGATCCATATAATGCCTCACAAGACATTGAGCGAAAACGAGCACTGTCCTTGGTCCTCTCTCAAACCCGGCAACAAGAACGAAGAGATGAAGAGATTCTTGCTGAAGCAAAAAGAATAGCTGAGTTACGTGCAGCTGCTAAGGTTGCTGAAGAGTCTGAGGTGGCCATTGCTTTGAATGCTGGTGCCGAAGTTTCAGAGAGAGCTATCCCTGGTGAAACTGTATCTCCATCAAATGCACAACATCCATCAATAGTTGTGCCTTCTTCAATGACAACCGAGAATGCTTCTACTCTAGCTTCACTTCGCATTCTTCCTGTATATATGAGAACGTATGGACTTGATCAAATGGTGCAAGCTGCAAGCTCATCCGCTGGACTGCGGACTATCAAACGGGTTGAGCAAACTTTGCAAGACCTTGGGATCAATTTGAAACCAAGAGTTCCAACAAAAGCTGTTTGTGCAGAACATCTTGAACTAAGAAAAGAAATACTAACGTTGCTGAATCTTCAGAAACAGCTGCAATATAAGGAGGCTGAAGGTTCATCTTTTCGTGATGGGTCCTACAGTGAAACACCAGGGACACCAAAGGATCGGACATTTGTCCCAGACTCCACGAGTTTTGGAGGGGAAAGGATTGGCAAAAGGGACCAGAAGCGCAAGGCAACTGGACGGCTTTCAGAAGCTCCATCGTCACCTGCTCAGTCTAAAAGATCTAGAAAATTAAAGGCCTCTGATCTTTAG	1320	0.4492	MDAKDILGLPKNPFASQDKKSRPPKESQRKPDGISREVYALTGGLAPLMPAVDSSLLKKRPPSDEKITWQWLPFTNSARKDDLHLHHWVRVVNSAPPTGDYSFAKYNKCADITKYTDEEYEKYLTDPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSQAMLSARNPSFGDIGAHSLVKDPYNASQDIERKRALSLVLSQTRQQERRDEEILAEAKRIAELRAAAKVAEESEVAIALNAGAEVSERAIPGETVSPSNAQHPSIVVPSSMTTENASTLASLRILPVYMRTYGLDQMVQAASSSAGLRTIKRVEQTLQDLGINLKPRVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSFRDGSYSETPGTPKDRTFVPDSTSFGGERIGKRDQKRKATGRLSEAPSSPAQSKRSRKLKASDL*	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g1000	439	MobiDBLite	consensus disorder prediction	18	33	-	-
	Dod07g1000	439	SMART	sant	125	174	IPR001005	-
	Dod07g1000	439	Pfam	SANT/Myb-like domain of DAMP1	101	175	IPR032563	-
	Dod07g1000	439	MobiDBLite	consensus disorder prediction	371	439	-	-
	Dod07g1000	439	CDD	SANT_DMAP1_like	129	171	-	-
	Dod07g1000	439	Gene3D	-	98	183	-	-
	Dod07g1000	439	MobiDBLite	consensus disorder prediction	402	416	-	-
	Dod07g1000	439	PANTHER	BNAA04G26950D PROTEIN	2	439	-	-
	Dod07g1000	439	Pfam	DNA methyltransferase 1-associated protein 1 (DMAP1)	315	378	IPR008468	GO:0005634\|GO:0045892
	Dod07g1000	439	PANTHER	DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER	2	439	IPR027109	GO:0006281\|GO:0006338\|GO:0035267\|GO:0043967\|GO:0043968
	Dod07g1000	439	MobiDBLite	consensus disorder prediction	377	394	-	-
	Dod07g1000	439	MobiDBLite	consensus disorder prediction	1	34	-	-
	Dod07g1000	439	SUPERFAMILY	Homeodomain-like	125	171	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod07g1000	Dod-Chr7	17518575	17527367	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Dod07g1000		DMAP1	2.7e-06	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1000	K11324		-	qsu:112038673	684.485