Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0952 ATGTATTGGAGGGGAGTTATGGCAGGCCATATTGGTCTGGGTGTCATGGAAGAGGAGGTTTGGAGGAAAGGACCATGGACTGCTGAAGAGGACAAATTGCTAATTGAGTATGTCAGGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCCAGGCTTGCAGGGCTGAAGAGAAATGGGAAGAGTTGTAGATTGAGATGGGTGAATTATCTCAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCTAGAAGCTTGCCAGGAAGAACTGATAACGAGATTAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCAAAACGTCCCCCTGATGCTGCAGAAAGGGCTAAGAACCGCCTCCTGAGGAAGCAGCAATTTCACCAGCAACAACAACAGTTGCAGCAGCAGCAGCAGGTGCAACAGCAACAACAACAACAACAACAGCAGCAGCAGCAGCAACTGCAGTTCAACTTTGACATGAAAGGGATCATGGCCTTGCTTGAGGACAGTAGCCACAGAGTACCTTGCATATCTCAGGTGAGACAAGATATTGTCAACATGTACCCCAACACAATTGAGGAGCAAGGATACTTATACTCTATGCTCAATGGCAATGCCTTCCCACCAGAGGCCCCAAATGAAGAAACTCTCTGGGAAGGGCTGTGGAACTTGGAAGATGTTCATTCCAATTTCAGCATAGCTAATGCAACAAACAAAGCCAATCTACACAATCTAGTTGCTCCTTTCTGTTAA 810 0.4654 MYWRGVMAGHIGLGVMEEEVWRKGPWTAEEDKLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKRPPDAAERAKNRLLRKQQFHQQQQQLQQQQQVQQQQQQQQQQQQQQLQFNFDMKGIMALLEDSSHRVPCISQVRQDIVNMYPNTIEEQGYLYSMLNGNAFPPEAPNEETLWEGLWNLEDVHSNFSIANATNKANLHNLVAPFC* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0952 269 Coils Coil 145 172 - -
Dod07g0952 269 SUPERFAMILY beta-sandwich domain of Sec23/24 142 198 - -
Dod07g0952 269 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Dod07g0952 269 Gene3D - 80 124 - -
Dod07g0952 269 CDD SANT 80 121 IPR001005 -
Dod07g0952 269 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Dod07g0952 269 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Dod07g0952 269 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Dod07g0952 269 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Dod07g0952 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Dod07g0952 269 SMART sant 75 123 IPR001005 -
Dod07g0952 269 SMART sant 22 72 IPR001005 -
Dod07g0952 269 Gene3D - 23 75 - -
Dod07g0952 269 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 262 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dod07g0952 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Dod07g0952 269 PANTHER MYB TRANSCRIPTION FACTOR 4 262 - -
Dod07g0952 269 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0952 Dod-Chr7 14925524 14926951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0952 16 269 MYB Transcription Factor Family AT4G13480 54.478 6.24e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod07g0952 Myb_DNA-binding 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0952 K09422 - gmx:100795981 412.535