Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0942 ATGGCTGCCACAGGTGCTGCAGGCATAGCCTCCTTGTTCTCTTCTTCCATCAACACTACTGTCAAATGTCTCCGTTCCAAGAACTGCTCCTACACAGATCCTCTCACGACAATAATATCCTCAAACCGCACCTTATTATCGTCAGTGTCACAGTCTTACCTAGGGGAACCTTTGTCCATTATTGGTGCCATTAATCCACACAAGTTGTGGGTGCCTGGAACTTCAGCTGCTGTTGCACAAGAAGAGGTGGTAGTGGCTGCTGATGTTGATGAAGGCATAGTTGAAGAGGAGGGAGAGGAGGGATTTGATGAAGAAGGAGGGGAAGTGGTGCCGCAAGAAGACACTGAACATTCCTCTGTCAGCACTAAGCTTTATTTCGGGAATTTGCCTTATAGTGTCGATAGTGCACAACTTGCAGGGTTAATTCAGGACTATGGCAGCGCAGAACTAATTGAGGTTCTTTATGACAGGGAAACTGGGAAAAGCAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGATTGTAATGCAGTAATCGAAAATCTTGACGGAAAAGAGTTCTTGGGCCGAACCTTGCGCGTTAACTTCTCTAACAAACCGAAACCAAAAGAACCACTGTACCCGGAAACCGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCAGAGAGCCTGACAGAAGCGTTTCAAGAGTATGGAAATGTGGTTGGAGCTAGGGTCTTATATGATGGCGAAACTGGAAGGTCACGTGGCTATGGCTTCGTCTGCTATTCAACGAAATCAGAAATGGAATCTGCCCTTGCATCCCTGAATAATGTGGAACTAGAAGGACGGGCAATGCGTGTAAGCTTGGCTCAAGGGAAACGTTCACAAGGGTAA 891 0.4613 MAATGAAGIASLFSSSINTTVKCLRSKNCSYTDPLTTIISSNRTLLSSVSQSYLGEPLSIIGAINPHKLWVPGTSAAVAQEEVVVAADVDEGIVEEEGEEGFDEEGGEVVPQEDTEHSSVSTKLYFGNLPYSVDSAQLAGLIQDYGSAELIEVLYDRETGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSNKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKSEMESALASLNNVELEGRAMRVSLAQGKRSQG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0942 296 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 158 198 - -
Dod07g0942 296 PANTHER TRANSFORMER-2-RELATED 98 161 - -
Dod07g0942 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Dod07g0942 296 SUPERFAMILY RNA-binding domain, RBD 208 293 IPR035979 GO:0003676
Dod07g0942 296 Gene3D - 79 203 IPR012677 -
Dod07g0942 296 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 204 294 - -
Dod07g0942 296 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 98 161 - -
Dod07g0942 296 PANTHER TRANSFORMER-2-RELATED 204 294 - -
Dod07g0942 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Dod07g0942 296 SMART rrm1_1 123 196 IPR000504 GO:0003723
Dod07g0942 296 SMART rrm1_1 214 287 IPR000504 GO:0003723
Dod07g0942 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 194 IPR000504 GO:0003723
Dod07g0942 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 284 IPR000504 GO:0003723
Dod07g0942 296 Gene3D - 204 296 IPR012677 -
Dod07g0942 296 SUPERFAMILY RNA-binding domain, RBD 121 204 IPR035979 GO:0003676
Dod07g0942 296 PANTHER TRANSFORMER-2-RELATED 158 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0942 Dod-Chr7 14658528 14663415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0942 121 292 Eukaryotic Initiation Factors Gene Family AT3G16380 32.984 3.77e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0942 - - gmx:100820203 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2972 01 70343440 70345407 Dod07g0942 07 14658528 14663415 PCT