Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0893 ATGGCGGAACATTCCATACCCGAAGAAAAAGAACCAGCAACCTTCCAGAAGGTTCCATCCCCATCGCAAAACGACGTCGTCTTCCTCAACGGCAACCCCGTCCTCGTCGCCCAGCCCCTCACCGTGGTCCGCGCCCTCACCAGCACCCGCGTACTCGCCCCGCCCAACCCCTCCGAGCCCCAAACCCAGACGAGTCAACTCGGACGAGTCGAAACAACCACCGAGGAGGATGAGAAACGTGTTTCGCCCGAAAAGGAAGAAACGCGTTCCGACGAAAACGACGGTGTCTCTCCTTCGGAGGTGGTGATGGAGACGCAGATGGAAGAAGAACGAGAGCCCGAAAACGACGCTTCCTCCGAAGTGCAACGCTCTACGATGTCGTTTGAGGAGTTCCTGAAGGGCACGAACACCGAGGTCGCGTCCGAAGAGGAATCTCTGAGACCATTCGCTGGCGCTGGGAGTGTTCCCGTGAAGGAGGAACCGGTCACCGACGATGACGTGGCGGTTTTGAGCGTGAAGGAGCCGGTGAAGAAGGAGATCGTGAAGGTTGAGGTGAAGATTCCTGGTGTCGAAGACGGTGATTTCGAAGTGGAACATGGGTGGTTGTTGATGGGAAGGAAGGTAGAGATTGCGCTTTCTACGGCCAAAGGAGTGAGGAGGCTGGTTGATAATGAGATTGTTCACTTCGATTTTCCTCAAGCCACTTTCTCTCGCAAGTCGCAATCGATCGTTCGCATCTCAACCAAGCGTTCTGGAGGGGTTGGGAGGCTTCCAATGGAATGGGCAAAGACTGTCGTCCCTCTTGTGCAATCTGGAAATGTTAAGGTTCGAGGTCGATGCATAGCCGCACCTTATAGCTTGCAAATGATGCAAGAATTTATGTTGTTAGTGAGCTTTTACATTCACAAATCTGTATTCACAGAATGCGTTGACAGCTCTTGGAGGCTAGAGGCTAGCAGTAACAATAACTCTTCCATTTATCCACTCCTTAAACTGTTCAAAATGCTGGAGATTAAACCATGTCAGAAGGCTGAATTCTCCCCTGAGGATATTGATCCTCGGAAGCGATTGCTAGATCCTAATGTTGACCAAGATGAAGCGGCAGCATTGCATATGATCAAGCGAAGGAAGGGTGCTGATCCAAGGAAGGGCGATGAAGAGATTCCGGAGCAGAATCAAAATGAACAAGCTCTTTCGGAGTCAACTTTGAACAAGCTTGTTGGAGCTGCAGAAATCAATGACCTGGAGGAGAAAGATGCCCCGAGAACTCTGATGTGTGATCTAAAGCCTTACCAAAAACAAGCTCTCTATTGGATGTCAGAAATAGAAAAGGGAAACAATGCTGAGAGCGGTGAGCTAAATCTCCATCCTTGCTGGTCAGCCTACAATATATGTGAGGGAAGGAGAATTTATGTTAATATCTTCACGGGAGAAGCAACAACGAAATTTCCAAGAGCAACACAGATGGCAAGAGGAGGAATTCTGGCAGATGCAATGGGACTTGGAAAGACAGTTATGACGATTGCTCTGGTTCTCAGTAACCCAGGAAGAGGAAACTCAGAAAATGATAATACTATCACAAATAGGAGGAGGAAACTTAAGGGTGGCACCCTTATTGTTTGTCCCTTGGCATTGTTAGGCCAGTGGAAGGATGAGCTTGAAACACATTCTAAGGAAGATAGTTTATCTATATTTGTTCATTATGGTGGGGGCAGAACCACTGATGCTGAGTTGCTCGCAGTACATGATGTTGTCTTAACAACATATGGTGTCTTACAAGGCGCATTTAAAAATGATGGAGAGAATAGCATCTACCACAGGGTCCAGTGGTATAGGGTTGTGCTAGATGAAGCTCATGCTATAAAATCCCACAAAGGCCAGTGTGCCCTGTCTGCTTTTGCCTTGTCCTCACACTGCCGATGGTGTCTAACTGGAACCCCTCTTCAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGTAACTGGCCATGGTGGAACAAGTTGATTCAAAGGCCTTATGAGAATAATCAACCAAGAGCCTTGAAATTGGTCAAGGCCATTTTAAGGACACTGATGTTGAGAAGAACTAAAGAAACCAAGGACAAAAACGGAAGGCCCATACTTCTCCTGCCAGCAATCGATACCCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGTGACTTCTATGATGCCCTCTTCACGAGATCTAAGGTTCAATTTGACCATTATGTTGCCCAAGGAAAGGTTCTTCAACACTATGCGAATATCCTTGACTTATTATTGCAGTTGAGACGGTGCTGTAACCATCCATTTTTGGTTATGAGTGGAAGTGACCCACAGAAATATGCAGACTTGAGCAGACTCGCAAGAAAATTCCTCCAGTCTGGTGCTGAATCAGCCAACTTATGCAGCCAAAATGATCCACAGAAGCAAGCAGAGTTGAACAAACTTGCAACTACATTCCTTCTGAATACTGAATCTGCTCCCAACTCTCTGCAATCTCGTGCATATATTGAAGAGGTTTTGGATCACATTCAAAAGGGTGAAACCATAGAATGCCCTATATGTATGGAGTCGCCAGATGATCCTGTGTTTACACCATGTGCTCATAGGTTTTGTAGAGAATGCTTGTTCAGTCACTGGGGGACCTCAGAGGGTGGTAAATGTGCAATCTGTCGTCAACTACTCAAGAAAAGCGATCTGATAACTTGTCCAACTGAAAGCCCGTTCAAGGTTGATATTGAGAACAATATGACAGAATCTTCAAAGGTTTCAAAGCTCTTGGATTTCTTGCAGAAGATTCAGAAGTCACCCGCTCGTGAAAAAAGTATTGTATTTAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCACTTAGAAGGAGAGGAATTGGATTTCTAAGATATGATGGGAAATTGACCCAGAAACACAGGGAGAAAGTTTTGAGTGAATTTAATGTGACAACAGAGAAAAGGGTTTTGTTGATGTCACTTAGAGCTGGTGGCGTAGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTAGAGGAGCAAGCAATAATGAGAATTCATCGTATTGGACAAAAGCGAAGGGTTATTGTTAGAAGATTCATTGTCAAGGGCACAGTGGAAGATCGTTTGCAACAAGTGCAGGCCAGGAAACAGAGAATGATATCTGGTGCCCTCACTGACGACGAGGTTCGGACTTCCAGGATTCAAGACCTCAAAATGCTATTCACCTGA 3300 0.46 MAEHSIPEEKEPATFQKVPSPSQNDVVFLNGNPVLVAQPLTVVRALTSTRVLAPPNPSEPQTQTSQLGRVETTTEEDEKRVSPEKEETRSDENDGVSPSEVVMETQMEEEREPENDASSEVQRSTMSFEEFLKGTNTEVASEEESLRPFAGAGSVPVKEEPVTDDDVAVLSVKEPVKKEIVKVEVKIPGVEDGDFEVEHGWLLMGRKVEIALSTAKGVRRLVDNEIVHFDFPQATFSRKSQSIVRISTKRSGGVGRLPMEWAKTVVPLVQSGNVKVRGRCIAAPYSLQMMQEFMLLVSFYIHKSVFTECVDSSWRLEASSNNNSSIYPLLKLFKMLEIKPCQKAEFSPEDIDPRKRLLDPNVDQDEAAALHMIKRRKGADPRKGDEEIPEQNQNEQALSESTLNKLVGAAEINDLEEKDAPRTLMCDLKPYQKQALYWMSEIEKGNNAESGELNLHPCWSAYNICEGRRIYVNIFTGEATTKFPRATQMARGGILADAMGLGKTVMTIALVLSNPGRGNSENDNTITNRRRKLKGGTLIVCPLALLGQWKDELETHSKEDSLSIFVHYGGGRTTDAELLAVHDVVLTTYGVLQGAFKNDGENSIYHRVQWYRVVLDEAHAIKSHKGQCALSAFALSSHCRWCLTGTPLQNSLEDLFSLLCFLRVEPWCNWPWWNKLIQRPYENNQPRALKLVKAILRTLMLRRTKETKDKNGRPILLLPAIDTQLIECEQSESERDFYDALFTRSKVQFDHYVAQGKVLQHYANILDLLLQLRRCCNHPFLVMSGSDPQKYADLSRLARKFLQSGAESANLCSQNDPQKQAELNKLATTFLLNTESAPNSLQSRAYIEEVLDHIQKGETIECPICMESPDDPVFTPCAHRFCRECLFSHWGTSEGGKCAICRQLLKKSDLITCPTESPFKVDIENNMTESSKVSKLLDFLQKIQKSPAREKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKHREKVLSEFNVTTEKRVLLMSLRAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKGTVEDRLQQVQARKQRMISGALTDDEVRTSRIQDLKMLFT* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0893 1099 CDD DEXDc_SHPRH-like 428 703 - -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 375 390 - -
Dod07g0893 1099 ProSiteProfiles Zinc finger RING-type profile. 862 902 IPR001841 -
Dod07g0893 1099 SUPERFAMILY RING/U-box 858 913 - -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 1 26 - -
Dod07g0893 1099 Gene3D - 479 704 IPR038718 -
Dod07g0893 1099 SMART ultradead3 424 682 IPR014001 -
Dod07g0893 1099 Pfam Zinc finger, C3HC4 type (RING finger) 861 906 - -
Dod07g0893 1099 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 484 665 IPR014001 -
Dod07g0893 1099 Pfam Helicase conserved C-terminal domain 933 1046 IPR001650 -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 51 160 - -
Dod07g0893 1099 Gene3D - 719 1099 IPR027417 -
Dod07g0893 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 703 IPR027417 -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 71 94 - -
Dod07g0893 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1090 IPR027417 -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 119 142 - -
Dod07g0893 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 853 910 IPR013083 -
Dod07g0893 1099 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 370 1098 - -
Dod07g0893 1099 CDD SF2_C_SNF 918 1057 - -
Dod07g0893 1099 SMART helicmild6 963 1046 IPR001650 -
Dod07g0893 1099 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 935 1099 IPR001650 -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 375 397 - -
Dod07g0893 1099 Pfam SNF2-related domain 431 781 IPR000330 GO:0005524|GO:0140658
Dod07g0893 1099 PANTHER DNA REPAIR PROTEIN RAD5B 370 1098 - -
Dod07g0893 1099 MobiDBLite consensus disorder prediction 51 70 - -
Dod07g0893 1099 ProSitePatterns Zinc finger RING-type signature. 877 886 IPR017907 -
Dod07g0893 1099 SMART ring_2 862 901 IPR001841 -
Dod07g0893 1099 Pfam HIRAN domain 213 295 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0893 Dod-Chr7 13575654 13583199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0893 168 1098 RAD5 or RAD16-like Gene Family AT5G43530 62.698 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod07g0893 SNF2_N 1.9e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0893 K15505 - gmx:100806677 1441.4