Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0885 ATGGATTTTGTTAGCAAAAGACACTTGATCCATGTGTCACATATCTCACGTGGGTTACAAACTCTTTGCCCTATGCCAAGTCTTCCTCAAGTGGCAGTGCACACTTCTAGTTCAAGTTTACCCTTTTCAGCAATCATTGTAATAGGGCTAATATCTACCTCCTTCTTGCTCATGAGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATCTGCACCGTGTTGATCTCGTGAGACGTTTTTCCCTGTCTAGGCGTCACGAAGAGGCGTTTGCATCGCCCTCGCCGGAATCGGAGCCTAAAGGACTAGATGAAGCAATGATCCGGTCAATCCCAGTGATTCAATATAAGAAAGAAGAGGAGGGAAACTCTGGTGAAAGAAGCTGTTGTGAATGTGCAGTTTGCTTGAATGAGTTTCAACAAGATGAGAAGCTCAGGCTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATTGATGTTTGGCTTCAAAACAATGCCAATTGCCCACTTTGCAGAAGAAGCATTTCCTTGACATGCCAAATCGATGCTGATGAGGTCAGTCCAAGGCCTTCCCCTCAGGAACAAGGCCCACATGTTGGAAACCTTGTTGATGGTTATGAAGATTTTGTTGTGATTGATTTGGGTAGTGAACATGATGGAGACCAAAATTTGGAAGCAGGACAAGAAAGAAGCAATGTGTTATTGGAGCTGCTACCATACCCTATTGGTCCTTTACAGAGGAAGTTGGAGCAGAGGATTATGCTGAACAAAGCTAGGAAGCTTCAAAAAGTGACCAGTATGGGGGATGAGTGTGTTGGAAATAGGGCCAAAGATGAAAACTTCTCAGTCCAGCCCTTAAGGAGGTCTTTCTCAATGGACTCATCAGGGGACAGAAAGTTTCACTTGGTAGTTGAACAAGCTTTGCAGCAACAGAATGAGCATGTGAATGAGGTGAGCTCCATAGAAGTTTGTGGTGGTAGTGGTAGAGCCAAGAGGTCATTCTTTTCCTTTGGACATGGAAGTAGATCAAGAAATTCTGCTGTGCTACCTGTTTATTTTGACCCCTGA 1071 0.4407 MDFVSKRHLIHVSHISRGLQTLCPMPSLPQVAVHTSSSSLPFSAIIVIGLISTSFLLMSYYIFVIKCCLNLHRVDLVRRFSLSRRHEEAFASPSPESEPKGLDEAMIRSIPVIQYKKEEEGNSGERSCCECAVCLNEFQQDEKLRLIPNCGHVFHIDCIDVWLQNNANCPLCRRSISLTCQIDADEVSPRPSPQEQGPHVGNLVDGYEDFVVIDLGSEHDGDQNLEAGQERSNVLLELLPYPIGPLQRKLEQRIMLNKARKLQKVTSMGDECVGNRAKDENFSVQPLRRSFSMDSSGDRKFHLVVEQALQQQNEHVNEVSSIEVCGGSGRAKRSFFSFGHGSRSRNSAVLPVYFDP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0885 356 PANTHER RING-H2 FINGER PROTEIN ATL16 30 355 - -
Dod07g0885 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 178 IPR013083 -
Dod07g0885 356 CDD RING-H2_PA-TM-RING 130 173 - -
Dod07g0885 356 Pfam Ring finger domain 130 173 IPR001841 -
Dod07g0885 356 SMART ring_2 131 172 IPR001841 -
Dod07g0885 356 SUPERFAMILY RING/U-box 111 179 - -
Dod07g0885 356 PANTHER RING-H2 FINGER PROTEIN ATL16 30 355 IPR044600 GO:0016567|GO:0016740
Dod07g0885 356 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0885 Dod-Chr7 13434262 13435739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0885 35 356 C3H Transcription Factor Family AT1G04360 44.669 2.12e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0885 - - gmx:100775286 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2522 01 64326321 64327552 Dod07g0885 07 13434262 13435739 PCT