Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0880 ATGGTGAGAGCCCCTTGTTGTGAAAAGGTGGGATTGAAGAAGGGTCCTTGGACCCCTGAGGAAGACCATATCCTCACATCTTACATCCAAAAACATGGCCATACCAATTGGCGTGCACTCCCAAAGCAAGCTGGCCTCTTAAGGTGTGGGAAGAGCTGCAGACTCCGCTGGATTAACTATTTAAGGCCTGATATCAAGAGAGGGAATTTCACAAATGAGGAAGAGAAAGCTATCATTGAGCTGCATGAGATGCTGGGGAATAGGTGGTCAGCAATTGCAGCAAAATTACCGGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTGCTGAAAACCAACCAACCCAATTCAGATACCAAAAGAATATCCAAACCAAAAATCAAACGATCTGATTCTAATTCCAGCACACTAACTCACTCAGAACCTGCCAGTCTTAATTTTCCTGAAATGGAGACAACTTCAGCATGCACTTCCTACAGTGATTTTTCATCAGTCTCAATTAGTACTGGAGGGAAAAATATGGACAGCACCATCAAGATTGAGGATATAGAGTCTATTGAAACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGGCAGCAATGGATGATGATAAAAGCCCCACCATGCCATCAAATTCTTGGACAATATCAAATCATGAAGTAACACCTCAATGCCCAGTTGATTCATTATTAGAAACCTTGCAACAGAGTTATGAAGATGTTTCAAATTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCATCAGATCTGGGGACTCAATAGAATTGCCAGGGTTCTAA 828 0.4179 MVRAPCCEKVGLKKGPWTPEEDHILTSYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEKAIIELHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNQPNSDTKRISKPKIKRSDSNSSTLTHSEPASLNFPEMETTSACTSYSDFSSVSISTGGKNMDSTIKIEDIESIETMPEIDESFWSEAAMDDDKSPTMPSNSWTISNHEVTPQCPVDSLLETLQQSYEDVSNFDDGMDFWYDLFIRSGDSIELPGF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0880 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod07g0880 275 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod07g0880 275 CDD SANT 69 112 IPR001005 -
Dod07g0880 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod07g0880 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod07g0880 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod07g0880 275 CDD SANT 16 61 IPR001005 -
Dod07g0880 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod07g0880 275 MobiDBLite consensus disorder prediction 117 154 - -
Dod07g0880 275 Gene3D - 13 66 - -
Dod07g0880 275 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 271 - -
Dod07g0880 275 SMART sant 66 114 IPR001005 -
Dod07g0880 275 SMART sant 13 63 IPR001005 -
Dod07g0880 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod07g0880 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 271 - -
Dod07g0880 275 Gene3D - 69 145 - -
Dod07g0880 275 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0880 Dod-Chr7 13117073 13119459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0880 1 263 MYB Transcription Factor Family AT2G31180 48.485 6.24e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod07g0880 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0880 K09422 - gmx:100807569 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2529 01 64429688 64431911 Dod07g0880 07 13117073 13119459 PCT