Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0874 ATGGCAGATCCAGCTAGTTATGGGAATCATGAGCGTGATATTGAACATGCATTCCTTGCTTTGAAAAAGGGCACTCAATTAGTAAAGTATTGTCGGAAAAGGAAGCCAAAGTTTTGTCCATTCAGACTCTCACCAGATGAAACAACGCTGATTTGGATTTCTCATGGAAAGGAAAAAAATCTAAAATTGTCTTCTGTTTTGCGCATCATCCCTGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAAGGGGAGCGATCACTTGATCTGATCTGCAAGGACAAAGCTGAGGTAGAGGTATGGTTTGAAGGCCTTAAGGCATTAATTTCTACTCAACAGCAAAATAGGCGCACTAGAAGTGAGTTACCAGATGATGGTGTTGACATTGGTCAGAATGATCGTCCTTTTGGTGGAGCACTAGAGTTTACTTCAAGCATTGTCCGAAGCAGAATTTCTTTCGATTCACATTCTCGTGAATCTCCATTGGATTTGGCAAGCTCAGATGTGGGGTCAGAACATGCAACTATGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTATTAGTGTGTCAAGTGCTGGCTATGCAAGTAGTGTAGCGTCAGGACCAGATGACATAGACTCTCTAGGTGATGTTTTCATATGGGGAGAGGTTTGTGCAGATGGAGCCTTACCTGATGGGTTGGGGAGTCAAGTCCATTTAAAGACAGATGTGCTGACTCCTAAGCCATTAGAGTCTGATGTTGTTCTTGATGTTCATCAGATGGGGTGTGGTGCACATCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTCACTTGGGGAGAGGACTCTGGAGGAAGACTTGGTCATGGGTTTGAAAAATATTGTGGTAAACCCCAGCTTGTGGAGTCCCTAGCAGTTACCAATGTAGGATATGTTGCATGTGGTGAAAATCATACATGTGCTATGTCTACATCTGGTGAACTATTCACCTGGGGTGATGGCACACATAATGCTGGACTTCTCGGGCATGGTACTGACGTAAGCCATTGGATACCTAAGAGGGTCAGTGGCCCTTTAGAAGGACTTCAAGTTGTATCTGTAGCATGTGGTGCATTGCATTCAGCATTGGCAACCTCCAATGGAAAACTGTTTACCTTTGGCGATGGAAAATTTGGTGTCCTTGGCCATGGAGATCGAGAGAGTGTAGCATATCCAAAGGAAGTACAGTTATTGAGTGGACAAAAGGCAATTAAGGTTGCATGTGGACTATGGCACACAGCAGCTATCATTGAGGTTATTGATCAGTCTGCTTCAAATGCTTCATCCAGAAGGCTTTTCACTTGGGGTGATGGTGACCAATATCGTTTGGGTCATGTTAACAAGGACACATGCCTTCAACCAACTTGTGTATCTGCGCTTGCTGAATATAGTTTTCACCAGATAGCATGTGGGCACACAATGACTGTTGCCCTCACTGCATCTGGTCATGTCTTTACTATGGGAGGAACTACATATGGTCAACTAGGAAATCCGATGTCTGACGGAAAAGTGCCAATTCTGGTCCAAGATAATTTAGTAGGTGAGTTTGTGGAGGAAATATCATGTGGAGCACATCATGTTGCTGTATTGACTTCAAGAAGTGAGCTTTACACTTGGGGGAGAGGTACCAATGGAAGATTGGGACATGGAGACACAGAGGACAAAAATTCACCAACATTGGTGGAAGCCTTAAAAGAGAGGCTTGTAAAGAATATCTCATGTGGCTCAAACTTTACATGTTGTATATGCATACATAAGTGGATCTCTGGAGCTGACCAATCTGTTTGCCATGGTTGTCGGCAACCATTTGGTTTTACTAGGAAAAGGCACAATTGTTATCATTGCGGGTTGGTTTATTGCAATCCCTGTAGTTCCAAAAAGGCACTGAAAGCTGCATTGGCTCCAACACCCAGCAAACCACATCGTGTATGTGATGCTTGTTATGCTAGGCTTAAAGTTCCTGAGACTAGTAGTGCATCCAATTTTAATAGAGAAGTTACTCGTCCTTATAGTTCCATATATGGAAAGGAAAGATCTGATAGAGGAGAGGTAAGGAGTTCAAGAATTCTCTTGTTTCCCACCAAAGAACCATTAAAGTACCTTGAGATAATGACTAGTAAGCCTGGAAGAACACATGACTCTTCTTCCCTGGTCCGAGCTACGCAACCAAGTCCATATACACAAACAAGTCAACCTCCCACTCCACCTACACCAGCTAATTCTAGACCTGCATCACCGTATGCAAGAAGACCAAGCCCACCGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGACAGTTTAAGGAAGAAAAACGAGCTTTTGAATCAAGAAGTCTCAAAATTACAAAACAAAATTCAAAGTTTGAAGCAGAAGAGTGACATGCAAGATATGAAGATTCATGAACTACAAAAATATGTTGAGGAAGCCACCTCATTGGCTGGGGAGGAATCATCTAAGCATAGAGTAATAAAGGAAATTCTCAAGTCCATGACAGATCAGTTGAGAGAAGTGACTGAGAAGTTGCCACCAGAGATTGCTGACAGTCAGACCTTAAGAATCATGCATACTCACACACATGATTTTCTTAAAGACATAGGATTTGAATCTTCTTCCATCCCATCAAGCTTTGAGCCTGAGCAACAAAGTGCACCTGATATATCTGGCTTAGATAGTGACTCATACAAACTTCCAGAACAAGGAATGGAAGAAAATGTTGATGCTGCCAGTGCTGATCGTCCAACTATTAATGGAGAAAATGTTCTTCAAGAAGGCAATGGACCATCTGTATCTAGTACAGGAGTGCCTCTGCCAAACCCAGAAAATAGCTCAAGATCACATAAAGCTGGGAGAGACGAAGAAATTACATCCATTGAACAATTTGAACGTGGTGTTTATATCACAGTTATAGTGCTACCTTCTGGTAGCAAAGTTTTCAAACGGGTTAGATTCAGTAAGCGCAGATTTGATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAGAGATAGGGTGTTTAGGAAATATAGTTCAGCAGCTAGTGGTTCATCTATCACCACACGACATGTTGAAGAGAGTATTGAGGCATCACCTTCTTCGAAAACTTAG 3177 0.424 MADPASYGNHERDIEHAFLALKKGTQLVKYCRKRKPKFCPFRLSPDETTLIWISHGKEKNLKLSSVLRIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWFEGLKALISTQQQNRRTRSELPDDGVDIGQNDRPFGGALEFTSSIVRSRISFDSHSRESPLDLASSDVGSEHATMPVRTSVGDGSRISVSSAGYASSVASGPDDIDSLGDVFIWGEVCADGALPDGLGSQVHLKTDVLTPKPLESDVVLDVHQMGCGAHHIALVTRQGEVFTWGEDSGGRLGHGFEKYCGKPQLVESLAVTNVGYVACGENHTCAMSTSGELFTWGDGTHNAGLLGHGTDVSHWIPKRVSGPLEGLQVVSVACGALHSALATSNGKLFTFGDGKFGVLGHGDRESVAYPKEVQLLSGQKAIKVACGLWHTAAIIEVIDQSASNASSRRLFTWGDGDQYRLGHVNKDTCLQPTCVSALAEYSFHQIACGHTMTVALTASGHVFTMGGTTYGQLGNPMSDGKVPILVQDNLVGEFVEEISCGAHHVAVLTSRSELYTWGRGTNGRLGHGDTEDKNSPTLVEALKERLVKNISCGSNFTCCICIHKWISGADQSVCHGCRQPFGFTRKRHNCYHCGLVYCNPCSSKKALKAALAPTPSKPHRVCDACYARLKVPETSSASNFNREVTRPYSSIYGKERSDRGEVRSSRILLFPTKEPLKYLEIMTSKPGRTHDSSSLVRATQPSPYTQTSQPPTPPTPANSRPASPYARRPSPPRSTSPGFSRSLIDSLRKKNELLNQEVSKLQNKIQSLKQKSDMQDMKIHELQKYVEEATSLAGEESSKHRVIKEILKSMTDQLREVTEKLPPEIADSQTLRIMHTHTHDFLKDIGFESSSIPSSFEPEQQSAPDISGLDSDSYKLPEQGMEENVDAASADRPTINGENVLQEGNGPSVSSTGVPLPNPENSSRSHKAGRDEEITSIEQFERGVYITVIVLPSGSKVFKRVRFSKRRFDEHQAEEWWNKNRDRVFRKYSSAASGSSITTRHVEESIEASPSSKT* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0874 1058 ProSiteProfiles BRX domain profile. 978 1033 IPR013591 -
Dod07g0874 1058 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Dod07g0874 1058 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Dod07g0874 1058 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Dod07g0874 1058 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Dod07g0874 1058 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Dod07g0874 1058 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Dod07g0874 1058 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Dod07g0874 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Dod07g0874 1058 SUPERFAMILY PH domain-like 15 123 - -
Dod07g0874 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 685 IPR013083 -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 1036 1058 - -
Dod07g0874 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Dod07g0874 1058 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 269 279 IPR000408 -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 893 920 - -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 940 967 - -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 750 775 - -
Dod07g0874 1058 Pfam Transcription factor BRX N-terminal domain 839 873 IPR027988 -
Dod07g0874 1058 CDD PH_PLC_plant-like 12 124 - -
Dod07g0874 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Dod07g0874 1058 SMART fyve_4 606 675 IPR000306 GO:0046872
Dod07g0874 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Dod07g0874 1058 SUPERFAMILY RCC1/BLIP-II 222 609 IPR009091 -
Dod07g0874 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 893 912 - -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 940 975 - -
Dod07g0874 1058 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 744 - -
Dod07g0874 1058 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 748 1039 - -
Dod07g0874 1058 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 744 - -
Dod07g0874 1058 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 748 1039 - -
Dod07g0874 1058 Gene3D - 13 133 IPR011993 -
Dod07g0874 1058 Pfam Pleckstrin homology domain 19 123 IPR001849 -
Dod07g0874 1058 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Dod07g0874 1058 Gene3D - 176 345 IPR009091 -
Dod07g0874 1058 Gene3D - 346 609 IPR009091 -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 728 785 - -
Dod07g0874 1058 MobiDBLite consensus disorder prediction 730 749 - -
Dod07g0874 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Dod07g0874 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 334 385 IPR000408 -
Dod07g0874 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Dod07g0874 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Dod07g0874 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Dod07g0874 1058 Pfam Regulator of chromosome condensation (RCC1) repeat 453 500 IPR000408 -
Dod07g0874 1058 Pfam FYVE zinc finger 608 673 IPR000306 GO:0046872
Dod07g0874 1058 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Dod07g0874 1058 Pfam Transcription factor regulating root and shoot growth via Pin3 980 1032 IPR013591 -
Dod07g0874 1058 SUPERFAMILY FYVE/PHD zinc finger 608 675 IPR011011 -
Dod07g0874 1058 Coils Coil 788 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0874 Dod-Chr7 13031606 13044198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0874 981 1033 Major Intrinsic Protein MIP AT1G31880 43.396 9.45e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0874 - - gmx:100812689 1443.33