Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0845 ATGGCGCACAGGTTGCTGAGGGACCACGAAGCTGACGGCTGGGAGCGCTCCGACTTCCCCATCATCTGCGAGTCCTGCCTCGGCGACAGCCCTTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACAAGGCCATTTACTGTTTTCAGATGGAGACCTGGTCGAGATGCAAGGTATAAGAAATCTGAGATCTGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTAGAATATGGACTGCCTGTGCAAGTCCGTGACACAGCCCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAAGGAGTATTTTGCTGAAGAGCATGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGCACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCACGAGATGCCGGTAACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCGGTGGCTTTGAAGCTACTTGGCAAGGCTGGAGAGATGACCTCTCTGGAGGTTCCTGAGGATGAGAGCATAAAAACACTTTATGTTGGTGGACTTGATGCTAGGATCACTGAGCAAGATTTGCGGGATCACTTCTATGCCCATGGTGAAATTGAATCTATCAAAATGGTTCTGCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCTAACAAGCTGGTTATCAAGGGCCTAAGGCTGAAGCTCATGTGGGGCAGGCCTCAGACATCAAAACCCGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAGGCAGCTATTGCTCACAGCGGGTTGTTACCTCGAGCAGTTATATCGCAGCAGCAGACCCAGGATCAAACCCAAGGAATGGTTTACTATAACAATCCGCCTCCTCCTCAGCAGGAAAGAAGCTATTACCCATCAATGGATCCTCAGAGAATGGGTGCTCTTGTTCCATCTCAAGAGGGTCCTCCTGGTGGAGGACCTACTGGGTCAGGGGAGAACAAACCCAATTTGGAGAAGCAGCAAATGCAACATTATCCCCATCCAATGAGGCCTCCTCCTCCACCTGGCCAATATCATCATCAGTATTATCCTCCTCAATATGGTTACATGCCCCCAGTTCCACCTTATCAACAATACCCACCACCACCTTACAGTACTTCAATGGCACCATCCCAGCCACCACCTGCAAATCATCCCTATCAGCATCCTATGCAACCGGGGTCTGGACAGGCTGGATCTGGATCTGCACCAGCCGAAGCTGGAACATCGACATCAGGGTCACAGCAGCAGTGA 1458 0.4822 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNKEYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEVPEDESIKTLYVGGLDARITEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQAAIAHSGLLPRAVISQQQTQDQTQGMVYYNNPPPPQQERSYYPSMDPQRMGALVPSQEGPPGGGPTGSGENKPNLEKQQMQHYPHPMRPPPPPGQYHHQYYPPQYGYMPPVPPYQQYPPPPYSTSMAPSQPPPANHPYQHPMQPGSGQAGSGSAPAEAGTSTSGSQQQ* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0845 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Dod07g0845 485 SUPERFAMILY RNA-binding domain, RBD 222 309 IPR035979 GO:0003676
Dod07g0845 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Dod07g0845 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Dod07g0845 485 MobiDBLite consensus disorder prediction 422 456 - -
Dod07g0845 485 MobiDBLite consensus disorder prediction 458 485 - -
Dod07g0845 485 Gene3D - 149 208 - -
Dod07g0845 485 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 464 - -
Dod07g0845 485 MobiDBLite consensus disorder prediction 401 415 - -
Dod07g0845 485 CDD RRM_RBM22 227 300 - -
Dod07g0845 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Dod07g0845 485 MobiDBLite consensus disorder prediction 333 352 - -
Dod07g0845 485 Gene3D - 212 310 IPR012677 -
Dod07g0845 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Dod07g0845 485 MobiDBLite consensus disorder prediction 333 485 - -
Dod07g0845 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 464 IPR039171 GO:0003723
Dod07g0845 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Dod07g0845 485 Pfam Torus domain 138 194 IPR032297 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0845 Dod-Chr7 12269241 12276329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0845 229 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 2.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0845 K12872 - gmx:100779917 810.831