Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0844 ATGTCCGATGCTCCGGCGAGTCCTGGCGGTGTTGGCGGCGGCGGCGGCGGCGGCGGAAGCCATGACAGCGGCGAGAACAGCCCGCGCTCCAATTTTAAGGAACAGGACCGGTTCCTTCCGATCGCGAACATCAGCAGAATCATGAAGAAGGTGCTTCCGGCGAACGGGAAAATCGCGAAGGACGCAAAGGAGACCGTACAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAGAGAGAAGAGGAAGACGATTAACGGCGACGATTTGCTTTGGGCAATGGCCACTCTGGGCTTCGAGGATTACATTGAGCCTCTCAAGATTTACCTCGCTAGATACAGAGAGGGTGATACCAAGGGTTCGGCCAAGGGTGGGGATGCCTCTGCTAGGAGAGATGTTCACCCGAATCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTGATTACTCAAATTCTCAGTCTCAGGCTCAACATATGATGTTTCCTATGCAAGGCCCAGGGCAAGAGTAG 546 0.544 MSDAPASPGGVGGGGGGGGSHDSGENSPRSNFKEQDRFLPIANISRIMKKVLPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKIYLARYREGDTKGSAKGGDASARRDVHPNPNAQLAHQGSFSQGVDYSNSQSQAQHMMFPMQGPGQE* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0844 181 MobiDBLite consensus disorder prediction 1 35 - -
Dod07g0844 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Dod07g0844 181 SUPERFAMILY Histone-fold 35 156 IPR009072 GO:0046982
Dod07g0844 181 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 13 165 - -
Dod07g0844 181 MobiDBLite consensus disorder prediction 127 181 - -
Dod07g0844 181 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dod07g0844 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 165 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dod07g0844 181 Gene3D Histone, subunit A 26 171 IPR009072 GO:0046982
Dod07g0844 181 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Dod07g0844 181 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Dod07g0844 181 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Dod07g0844 181 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0844 Dod-Chr7 12258600 12262564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0844 16 177 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.556 1.45e-81 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dod07g0844 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0844 K08065 - csv:101212699 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2695 01 66409888 66414123 Dod07g0844 07 12258600 12262564 PCT