Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0833 ATGAACTCCAACACGACCTCGAATCCTCAGTCCATGGTGACCCAAACACCCACCCCCACCACCACAACTCACAACACTGATGCCTCTGCCAAGAAGGTTAGAAAGCCTTACACCATCACCAAGTCCAGGGAGAACTGGACTGAGGAAGAGCATGACAAGTTCCTAGAAGCTCTTCAGCTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGATCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTTTTGAAAGTTCAAAAGAATGGGACAGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCCTACCCTCAAAAGGCTTCAAAAAATGTTTTGGTGCCACTGCCAGCATCCATTGCTTATGCTGCTTCGACAAATACCCTTGCACCTGGGTTTGCCACTTGGGATGAAGCTTCTCTGCTTGTGAGCAGTGGATCGAATAAATCATTGACTTGTCATGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAGCAACAGCAGTCTTAACGGTGTTGGGAACTCTACTAGAAAGCTACTTATTTCTGAGATACCACAGCAAGGGAAACAGGCTCCAGTAATTCATGGTTTGCCAGACTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCGGAAACAATTGGCCACGTCCAGAAGCTAAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGAATGTGAGGCCATTAAGAAGGTGTTGTCAACATATGATGTCAACTCCATGACAGTAGGGGTTGCTGCAGGGATTGATGTCAAGAAGCAGGCAAATGGTCTGTCATGTCAAGCCGTTTAA 921 0.4376 MNSNTTSNPQSMVTQTPTPTTTTHNTDASAKKVRKPYTITKSRENWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIAYAASTNTLAPGFATWDEASLLVSSGSNKSLTCHDELNNLHGNEADIGSKGITQISNSSLNGVGNSTRKLLISEIPQQGKQAPVIHGLPDFAEVYSFIGSVFDPETIGHVQKLKEMDPINFETVLLLMRNLTVNLSSPECEAIKKVLSTYDVNSMTVGVAAGIDVKKQANGLSCQAV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0833 306 PANTHER SWI/SNF COMPLEX-RELATED 14 300 - -
Dod07g0833 306 CDD SANT 45 88 IPR001005 -
Dod07g0833 306 PANTHER PROTEIN REVEILLE 8 14 300 - -
Dod07g0833 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Dod07g0833 306 MobiDBLite consensus disorder prediction 1 37 - -
Dod07g0833 306 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Dod07g0833 306 MobiDBLite consensus disorder prediction 96 115 - -
Dod07g0833 306 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Dod07g0833 306 Pfam Myb-like DNA-binding domain 43 88 IPR001005 -
Dod07g0833 306 ProSiteProfiles SANT domain profile. 41 94 IPR017884 -
Dod07g0833 306 SMART sant 42 90 IPR001005 -
Dod07g0833 306 MobiDBLite consensus disorder prediction 1 27 - -
Dod07g0833 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Dod07g0833 306 Gene3D - 45 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0833 Dod-Chr7 12031646 12037369 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod07g0833 Myb_DNA-binding 4.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0833 - - adu:107474168 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2689 01 66349176 66351805 Dod07g0833 07 12031646 12037369 PCT