Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0822 ATGATGGAAGAAACAACAACAACAATCATGGCTGCACTCTCCACCCTTACTCCTCCCCACTCCTCACATCTCACAAACACCATCCTCTCCGCCACAAACCACCACCAACGCCGCCTCACCTCCCTCCTCTCCTCCCCAACCCTCTTCTCCCTAACCCTCCACCACATTCACACACTCTCCCTCACTCAAAAAACCCTCCTCATTGCACGCCACCTCCTCTCATCGCTCCACATTCTCACCCTCCACCTCCACCTCCAACCCAACATCACCACACCCCCACCGCCACCACCTCCCTTGTCCACTTCAATAAGGCAACGCGACCTCGATGCCGTTTTGCTCCTCCTCCTCTTCTGCGAGACACACAACCACAACCCGAAGGTTCTAGAAACTCCCTTTTCGGAATGGAGGGTGAACTTGAGCAACCTCTTCTCGGAAAAGCTCTTAACGCTTTCTTGCGCTTGTGTTCCCATTGGGGCATGTCATGGGACAATCTTGATCCCTTACGTGGAGAACATAGCGCGGTGCTGGAGGCTTGTGGGTTCGTTGGGGTGTGGTGGTGGTGGTGGAGGCAATGATAATAAGGAGGTTGGGGAGGTGGCGGCGGCGGTGGCGGCCGTGGTGGCGCTGCCGGCGGTGGAGGTGGCGGTGGGAGGGAGGGAGTGCGTGATATGCAAGGAGGAGATGCGCGTGGGGAGGGACGTGTGCCAGTTGCCGTGTAAGCACTTGTTTCATTGGATGTGCATATTGCCGTGGCTTGGCAAGAGGAACACGTGTCCCTGCTGCAGGTTCAGGCTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTCTGGGAGTTCTTGGTAAAAGTCGCTGGAAAAGAATGTGGAGCATGA 876 0.5651 MMEETTTTIMAALSTLTPPHSSHLTNTILSATNHHQRRLTSLLSSPTLFSLTLHHIHTLSLTQKTLLIARHLLSSLHILTLHLHLQPNITTPPPPPPPLSTSIRQRDLDAVLLLLLFCETHNHNPKVLETPFSEWRVNLSNLFSEKLLTLSCACVPIGACHGTILIPYVENIARCWRLVGSLGCGGGGGGNDNKEVGEVAAAVAAVVALPAVEVAVGGRECVICKEEMRVGRDVCQLPCKHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEFLVKVAGKECGA* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0822 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 273 IPR013083 -
Dod07g0822 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 286 - -
Dod07g0822 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 286 - -
Dod07g0822 291 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Dod07g0822 291 SMART ring_2 221 261 IPR001841 -
Dod07g0822 291 SUPERFAMILY RING/U-box 217 267 - -
Dod07g0822 291 Pfam Ring finger domain 220 262 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0822 Dod-Chr7 11729695 11731043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0822 1 283 C3H Transcription Factor Family AT5G02750 49.135 2.40e-79 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0822 - - pvu:PHAVU_007G161400g 331.643