Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0804 ATGGGTAACTCTCACGGCCATCGCAAACACCGTAACTCCCTCCCTCACAACACGCACACGCCCACTCCTCCTCCTTATAAATATGGTGCTCAGCCACAACCCATTAATCCATTCCAAACCCAGCAACAGGGTAACTCCAATATTCCCAACAACAACAAGAACATGGTCTCTTTGTTGCCTTACGCGCGCGTCGACTCCACACTCCGAGCACTCGCTGGCCAGGCCGAGGGATTTGGTCGCTTCGCCATCGGTGGCCTACACGGTTCCCTTTATCATGTCACAACTCTCGCAGATGATGGACCGGGATCACTACGTGATGCGTGCCGCAGAAAAGAACCTTTATGGATTGTATTTGAGGTTTCAGGCACCATTCATCTGTCATCATACTTGAGTGTATCATCGTACAAGACCATTGACGGGAGGGGCCAAAGGATCAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGCGAGCATGTAATAATTTGCAATTTGGAGTTTGAAGGAGGCAGGGGGCCTGATGTTGATGCCGTTCAAATCAAGCCTAATTCAAAGCACATCTGGATAGATCGTTGCAGTCTCAGTGATTTTGATGATGGACTAATAGATATCACTAGAGAAAGCGCAGATATTACCATCTCAAGGTGTCACTTTTCTAAACATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCGTAAGGGTGACCATTCACCATTGCTTTTTCGATGAGACTCGACAAAGGCATCCTCGTGTTAGGTTCGCGAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAGCATAATATCTATGAAGCAGGTCAGAAGAAGGTGGCATTTAAATATCTTTCTGAGAAGGCAGCAGACAGGATAGCGGAAGCAACTGGCCACATAAGGTCTGAAGGAGACTTGTTCTTAAATGGAGCACAACCCGGGCTAATGACTGAGAACATTGGATGCAACATTTTTCATCCTAGTGAGCACTATCCCTCGTGGACAGTGGAACCTCCCACAGATGATCTGAAGCATGTTCTTCAGCACTGCACTGGATGGCAATCTGTGGCCAGGCCAGCAGATCAAGCAGTTTGCGCAGAATGA 1164 0.4716 MGNSHGHRKHRNSLPHNTHTPTPPPYKYGAQPQPINPFQTQQQGNSNIPNNNKNMVSLLPYARVDSTLRALAGQAEGFGRFAIGGLHGSLYHVTTLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDAVQIKPNSKHIWIDRCSLSDFDDGLIDITRESADITISRCHFSKHDKTILIGADPSHVGDRCVRVTIHHCFFDETRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADRIAEATGHIRSEGDLFLNGAQPGLMTENIGCNIFHPSEHYPSWTVEPPTDDLKHVLQHCTGWQSVARPADQAVCAE* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0804 387 PANTHER PECTATE LYASE 53 379 - -
Dod07g0804 387 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Dod07g0804 387 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Dod07g0804 387 PRINTS Pollen allergen Amb family signature 129 145 IPR018082 -
Dod07g0804 387 MobiDBLite consensus disorder prediction 1 52 - -
Dod07g0804 387 MobiDBLite consensus disorder prediction 1 15 - -
Dod07g0804 387 MobiDBLite consensus disorder prediction 33 52 - -
Dod07g0804 387 SUPERFAMILY Pectin lyase-like 72 380 IPR011050 -
Dod07g0804 387 Gene3D - 61 357 IPR012334 -
Dod07g0804 387 Pfam Pectate lyase 130 292 IPR002022 -
Dod07g0804 387 PANTHER PECTATE LYASE 18-RELATED 53 379 IPR045032 GO:0030570
Dod07g0804 387 SMART amb_all 101 299 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0804 Dod-Chr7 11453296 11457452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0804 96 384 Polysaccharide Lyase AT3G55140 76.471 1.27e-171 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0804 K01728 - tcc:18597629 624.78