Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0794 ATGGCCATCATCAAGAGACAAAGAGAGAATGAAGAAAAAGAGAGCATAGATTTGGCACATGGTCTTATGCTTCTCTCTAGTGCCATAGAAACCAACAAGCCCCTTCATCAGAAAAGCTATGCTTCTCCTGTGGAATTTGAGTGCAAGACATGTAACCGAAAGTTCTCATCATTTCAAGCCCTCGGTGGCCACAGGGCAAGCCACAAGAAGCCAAAACTTGATGTGGAGGGACTCAAATCAGAGGCCAAGAACCTGAGCCTTTGGAACAAGCCCAAGATGCATGAGTGCTCCATTTGTGGAATGGAATTCTCTCTGGGACAAGCATTGGGAGGGCACATGAGAAAGCATAGAGCTGTTACAGCTGATCATGAAGGAGCTGGGTTTTCTCCAATAAGCCAAGCTATTACAGCAAAAGCACCACCGGTTCTGAAAAGGTCAAATAGTAGTAAGAGGGTTATGGGCATGGACTTGAACTTGACACCACTGGAAAATGACCTCAAGTTGTTGTTTGGAAACAAGGCTCCTCAGTTTGTATAA 537 0.4507 MAIIKRQRENEEKESIDLAHGLMLLSSAIETNKPLHQKSYASPVEFECKTCNRKFSSFQALGGHRASHKKPKLDVEGLKSEAKNLSLWNKPKMHECSICGMEFSLGQALGGHMRKHRAVTADHEGAGFSPISQAITAKAPPVLKRSNSSKRVMGMDLNLTPLENDLKLLFGNKAPQFV* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0794 178 Gene3D Classic Zinc Finger 43 116 - -
Dod07g0794 178 SMART c2h2final6 46 68 IPR013087 -
Dod07g0794 178 SMART c2h2final6 94 116 IPR013087 -
Dod07g0794 178 PANTHER ZINC FINGER PROTEIN ZAT5 4 176 - -
Dod07g0794 178 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Dod07g0794 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Dod07g0794 178 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 176 - -
Dod07g0794 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Dod07g0794 178 SUPERFAMILY beta-beta-alpha zinc fingers 46 116 IPR036236 -
Dod07g0794 178 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Dod07g0794 178 Pfam C2H2-type zinc finger 46 71 - -
Dod07g0794 178 Pfam C2H2-type zinc finger 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0794 Dod-Chr7 11302670 11305259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0794 4 171 C2H2 Transcription Factor Family AT2G37430 50.000 7.84e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod07g0794 zf-C2H2_6 2.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0794 - - aprc:113870747 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2650 01 65936482 65938016 Dod07g0794 07 11302670 11305259 PCT