Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0726 ATGAAGGGAGTCAGTGTTCCAGGTGTTGGTGGCTGTTCTTCTATGTCAACTGTTATGTCCAAAGATGACAACTTGGTCCTCTCCTCTGAAGACTCTTCTTGCCCTGATGACTCCGACCTTGAGCTTGGACTTGGGTTAAGCCTTTCTCAACCTTCTGCAAAGTCTCATCATCAACACCATCACCATCGCCATCATGGCCCTTATGCTAGAATCTGGACTGCTAAGGATTTTCCTTCTTCAGCTTCTTCATCATCATCACCTTCCTCATCTTCCTCTTCCACTCCTTCTTCCTTGAGCAGGGCCAACAACACCACTGCTGGCACGAAAAGAACTGCTGATTCTGTTGCTGCTAATAACGGCCCCTGTCAGGTAGTTGGATGGCCTCCCCTCAGAACATATAGAATGAATAGCTTTAATAGCCATTCAAAATCACCAGCCACTGAGGTATTCGATTCAATGCCTGAGCAGAGTAAGAACAATGATAATGTGCTGAGAAAGAGTGCTGATAATGGCAATGATAATAATAACACTGATATCAAAGAAAAAAGAAACCTCAGGAGTTCCCTTATGGTCAAAGTAAATATGGATGGGGTAGCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAACCTTAGCGCAAACCTTGGAGGATATGTTCAGGGAATCAACTACTGTCGTCACCTGCAAAGGATCAAACGGAGAGGATCATGGCATTATTGTTGGAGGAGAAAGACACTCAAAATTGTTGGTTGGATCTTCCAATTTTGTTCTTACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGTGATGTTCCTTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGAAATGGACTTGCACCAAGATTGGAAGAAAAGAACTGCAGACAGAAAAGCAAGCCCATATAG 954 0.4403 MKGVSVPGVGGCSSMSTVMSKDDNLVLSSEDSSCPDDSDLELGLGLSLSQPSAKSHHQHHHHRHHGPYARIWTAKDFPSSASSSSSPSSSSSSTPSSLSRANNTTAGTKRTADSVAANNGPCQVVGWPPLRTYRMNSFNSHSKSPATEVFDSMPEQSKNNDNVLRKSADNGNDNNNTDIKEKRNLRSSLMVKVNMDGVAIGRKVDLSAHSSYETLAQTLEDMFRESTTVVTCKGSNGEDHGIIVGGERHSKLLVGSSNFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGNGLAPRLEEKNCRQKSKPI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0726 317 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 19 303 - -
Dod07g0726 317 SUPERFAMILY CAD & PB1 domains 183 291 - -
Dod07g0726 317 MobiDBLite consensus disorder prediction 76 118 - -
Dod07g0726 317 MobiDBLite consensus disorder prediction 133 174 - -
Dod07g0726 317 Pfam AUX/IAA family 40 304 IPR033389 -
Dod07g0726 317 MobiDBLite consensus disorder prediction 23 183 - -
Dod07g0726 317 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 303 IPR003311 GO:0005634|GO:0006355
Dod07g0726 317 ProSiteProfiles PB1 domain profile. 188 295 IPR000270 GO:0005515
Dod07g0726 317 Gene3D - 183 303 - -
Dod07g0726 317 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0726 Dod-Chr7 10153984 10158298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0726 132 297 B3 DNA Binding Superfamily AT3G61830 26.946 3.59e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod07g0726 AUX_IAA 1.2e-61 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0726 07 10153984 10158298 Dod07g0726 07 10153984 10158298 ECH
Dod01g2579 01 65011312 65015905 Dod07g0726 07 10153984 10158298 PCT