Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0691 ATGGAGGACGAGCAGGATCGGATTTTGCTCAACAGTTTGGGCGTGAAGTCTTTGAATCCCGAAGACGTTGAACGCGACGTGTTGGAAAAGGTAACACATGATGCAGCAACTGTTACTGAAGCTGAAGGGAGTGTCAAGGAAGAAGATTCTAGTGTATCAGGAAATGTTGATCCCTCTTCTGCTACTAAAGCAGAGCTTAATCAGAAGTTGAGGGCTGTGGAATTTGAAATTGATGCAGTAGCATCCACCATTCAGCAGTTGAAAAGTGTTGAGAATGATGGAGAATGTGGCAGTGTTGGCAAGGATGGCCAGGAGCAAGGGTTTGCTGAGGGTTTTGCTGAGGGTGGTTCAAATCTTCGGCATGTTCTTGCTGCTGATAGGTTACGGAGCCTGAAGAAAACAAAGGCTCAACTAGAGAAAGAGCTTTCTGAGTTGTATAAGAATAGTGCTTCCAAAAATGCTGAGTGTGAAAAATTGATCTTTGATGTAGTTAAGGAAGAGCGAAGACCCAAGAGGAAAATTAAAGAAGAAGGTAAAAAGTTACAGAAAAGCTCGGGGAAGCGGCATAAGATAGTCTCATTCAATGATGATGTTGATTTTGATGCTGCTTTGGATGCAGCCTCTGCAGGCTTTGTTGAAACGGAGAGGGATGAATTGGTGAGAAAAGGAGTTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCTATCAACAATCCGAAACATCAAGTAGTCATAATGCAGCTGAGGAAGGAAATAGTGGTGATCTTGCTTCTGCCAGTGTCGAAAGAGCTGTTAGATCAATATCTGAGGCAGCAAGAGCTCGTCCGACCACCAAGCTGCTTGAGTGTGATGCTGTTCCAAAGCTTGATGCCCCCACTTTTCCTTTTCAAAGGCTCAAGAAACCACTTAAATTTCCCGACAGAGAGGGAGAGCAAAATAAAGATCCAAAGAGGAAAAAGAGGAGGCCTTTGCCTGGTAGGAAATGGACCAGGCGTGTATCTTGCGAGGATGTGCATCCCAAAGAAAGTGAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAATTTAGAGGCACAAGATGTTGAACTTTCTGATCATGAATCTTCTTATACAACATTAGAAGGTGGGCTAAAAATCCCTGATAGAATTTTCGAAGCTCTGTTTGACTATCAGAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAAATGGGTCTTGGTAAAACTGTCCAGGTCTTATCTTTTCTAGGTGCGTTGCATTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGTCCTGTTACACTCTTGAGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCGAAATTCCATGTAGAGCTTTTACATGACTCTGCTCAGGATTCTGCTCCAAGAAAGAAGCAAGCAAAATCTGATGAATCAGACTATGAAAGCGATATTTCAAATAACAATGATTATGAGAGAAGTGCACCAACTAGAAATACAAGAAAGTGGGAATCCCTGATAAATCGTGTTATGAGATCAGATTCTGGATTACTTATCACTACTTATGAGCAACTAAGAATATTGGGGGACGAGTTGCTTGACATTGAATGGGGGTATGCTGTTCTTGATGAAGGGCATAGAATACGGAATCCTAATGCTGAAATTACCCTAGCTTGTAAACAGCTACAAACTGTACATCGCATTATAATGACTGGTGCACCTATTCAGAACAAACTGACAGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTACCTGTATTTGAAGCTGAATTTGCAGTTCCTATAGCGGTTGGTGGATATGCAAATGCTTCACCATTACAAGTGTCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGCATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTCTGTGGCCTTACATCAGAGCAATTATCTGCTTATAGAGCATTTTTAGCAAGTACGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCCCTTTCTGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGAGATCATGCATCGGGGAATCCGGATTATGGAAATCCAGATCGTAGTGGTAAAATGAAAGTTGTTGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTCGAGAACTTTTTAGAAACTTCTGGCCATATTTACCGGAGAATGGATGGTCACACTCCTGTAAAACGGAGAATGGCTTTAATAGATGAATTTAATGCTTCAAGTGAAATATTTATTTTTATTTTAACAACCAAAGTTGGGGGTTTGGGGACCAATCTTACTGGTGCAGACAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATACACAGGCCAGAGAACGTGCTTGGCGTATTGGTCAGAAACGGGATGTTACAGTGTATAGGTTGATCACAAGGGGGACTATTGAGGAGAAAGTGTATCATCGTCAGATTTACAAGCATTTTCTTACCAATAAAATACTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTATTCACTCTGAATGTGGATGCTGAAACTGGGTCTACTGAAACGTCAAATATTTTCAGTCAAATATCTGAAGAAGTAAATATTCTTGGGACACATACAGATGATCAGGAGAAGCATAAACTTGGCCAAACTGCTGAACTGGGTTCTGAAGATGTTTCAGCTAGTGGTAATGATGACAAATCACAGAGAGGATCTCCAAGAAGTAAGGGAAAAGAGAAAGTTGAACATAGTGAAGGGGTTGATGAGGAAACAAATATATTGAGAAGTCTTTTTGATGCCAATGGGATACATAGTGCTATGAACCATGATATGATCATGAATGCCCACGATGAGGAGAAGATAAGGCTTGAAGAGCAAGCTTCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGACAGTGTCTCTGTTCCTACATGGACAGGAAGGTCAGGAGCTGCTGGTGCACCATCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATACCCAGCTGGTAAATAATTCCAAAGCATCTGATGAATCACCCAGCAATGGAACTAACAAATTCAATGGAATTGCTGCTGGAGCTTCTTCTGGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCAAATTCGAGGCAACCAAGAAAAAGCCATCGGTGCTGGGCTTGAACATCAGTTTGTTACAGTCTCTAGTTCCACTAATCAAGCAAGATCTATGGATGTTAGATCTTCCAGGGCTTCTGAAAATTCTTCTGGGGTGCAACCTGAAGTATTGATTCGACAAATATGTACCTTTCTACAACAGCGAGGTGGTAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGATAGGATACCCTCAAAAGATCTTGCTCTATTCAAGAATCTGTTGAAGGAAATAGCAACTCTACAGAAAGGACCAAGCGGATCAAATTGGGTTCTAAAGCCAGACTACCAATAA 3672 0.4194 MEDEQDRILLNSLGVKSLNPEDVERDVLEKVTHDAATVTEAEGSVKEEDSSVSGNVDPSSATKAELNQKLRAVEFEIDAVASTIQQLKSVENDGECGSVGKDGQEQGFAEGFAEGGSNLRHVLAADRLRSLKKTKAQLEKELSELYKNSASKNAECEKLIFDVVKEERRPKRKIKEEGKKLQKSSGKRHKIVSFNDDVDFDAALDAASAGFVETERDELVRKGVLTPFHKLKGFERRYQQSETSSSHNAAEEGNSGDLASASVERAVRSISEAARARPTTKLLECDAVPKLDAPTFPFQRLKKPLKFPDREGEQNKDPKRKKRRPLPGRKWTRRVSCEDVHPKESENANGCLDTSSCENLEAQDVELSDHESSYTTLEGGLKIPDRIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKQAKSDESDYESDISNNNDYERSAPTRNTRKWESLINRVMRSDSGLLITTYEQLRILGDELLDIEWGYAVLDEGHRIRNPNAEITLACKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCGLTSEQLSAYRAFLASTEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASGNPDYGNPDRSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLETSGHIYRRMDGHTPVKRRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDTQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDAETGSTETSNIFSQISEEVNILGTHTDDQEKHKLGQTAELGSEDVSASGNDDKSQRGSPRSKGKEKVEHSEGVDEETNILRSLFDANGIHSAMNHDMIMNAHDEEKIRLEEQASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPSSSVRRKFGSTVNTQLVNNSKASDESPSNGTNKFNGIAAGASSGKALSSAELLAQIRGNQEKAIGAGLEHQFVTVSSSTNQARSMDVRSSRASENSSGVQPEVLIRQICTFLQQRGGSSSSASIVQYFKDRIPSKDLALFKNLLKEIATLQKGPSGSNWVLKPDYQ* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0691 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 652 IPR027417 -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 302 353 - -
Dod07g0691 1223 Coils Coil 1005 1032 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 236 261 - -
Dod07g0691 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 602 IPR014001 -
Dod07g0691 1223 CDD DEXHc_ERCC6 391 601 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 476 506 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 942 980 - -
Dod07g0691 1223 PANTHER SNF2/RAD54 FAMILY MEMBER 255 1119 - -
Dod07g0691 1223 Gene3D - 658 949 IPR027417 -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 476 492 - -
Dod07g0691 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 910 IPR027417 -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 238 255 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 961 980 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 303 320 - -
Dod07g0691 1223 Gene3D - 359 651 IPR038718 -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 331 346 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 35 61 - -
Dod07g0691 1223 Coils Coil 121 155 - -
Dod07g0691 1223 MobiDBLite consensus disorder prediction 1041 1091 - -
Dod07g0691 1223 CDD SF2_C_SNF 732 859 - -
Dod07g0691 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 898 IPR001650 -
Dod07g0691 1223 SMART ultradead3 387 610 IPR014001 -
Dod07g0691 1223 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 255 1119 - -
Dod07g0691 1223 Pfam Helicase conserved C-terminal domain 741 848 IPR001650 -
Dod07g0691 1223 Pfam SNF2-related domain 394 716 IPR000330 GO:0005524|GO:0140658
Dod07g0691 1223 SMART helicmild6 765 848 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0691 Dod-Chr7 9631194 9638159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0691 384 901 RAD5 or RAD16-like Gene Family AT1G02670 22.987 7.41e-26 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod07g0691 SNF2_N 1.4e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0691 K10841 - gmx:100820025 1959.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0691 07 9631194 9638159 Dod07g0691 07 9631194 9638159 ECH