Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0678 ATGGGAAGAGCTCCTTGCTGCGAGAAAGTGGGGTTGAAGAAAGGGCCATGGACTCAAGAAGAAGATCTCATCCTCATCAACTATATCAACACACATGGCCACAACAATTGGCGTACCCTTCCCAAACTAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAATTATTTGAGGCCGGATATCAAAAGGGGAAAGTTTACTGAGGAAGAAGAGGACACAATAATCAAGTTGCATGAAAAGTTGGGAAACAGATGGTCAGCTATTGCAGCAAGATTACCGGGTCGCACGGACAACGAGATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTGCAACAACCACAATGCAATAACAATAACAAGAGCCAAGACACAACAATACCAATTCCAAAACAAAATTTGCACCTTGCGTTGGACTCCAAAAAATCCAACCAATACCCAAAACAAGAACATCAACAAGAACCACCCGTGAATCCACGCAGTACTCATCAACATCATCATGTGATGATCAAAGTTGAAAGCACAGAGGAAAGGTCATTGTCTCCTCCACAGTGTTCAAGCAGTGACATGTCTACCCTCACCTCTATTATTACTACTACTAATCAAGACTTGTCAACGAATAATTTCAGTGTTCAATCGATTAACGATGGGGATAATCTTGCATTGGATGAGGATTTCTGGTCTGAAGTTTTGTCATCCGATAATTCTAATGGTGAGACAAGAAATTTTCAGGACATTTTAGGTGGTGAATTAAAGTTCCAATTTGCTTTCTCTTCACTAGCGCATGATGGAGAAGGGTTGCATATTAGTAGTTCGTCTAGTTTGTGTGATCATGGCATGGACTTTTGGTACGATATGTTTTCACAAAAGCTGAGTTGTGAAGTTGTTGGCCAGCTAGATATGGCTACTCATACAAATTTGTAA 939 0.4164 MGRAPCCEKVGLKKGPWTQEEDLILINYINTHGHNNWRTLPKLAGLLRCGKSCRLRWINYLRPDIKRGKFTEEEEDTIIKLHEKLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLQQPQCNNNNKSQDTTIPIPKQNLHLALDSKKSNQYPKQEHQQEPPVNPRSTHQHHHVMIKVESTEERSLSPPQCSSSDMSTLTSIITTTNQDLSTNNFSVQSINDGDNLALDEDFWSEVLSSDNSNGETRNFQDILGGELKFQFAFSSLAHDGEGLHISSSSSLCDHGMDFWYDMFSQKLSCEVVGQLDMATHTNL* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0678 312 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 255 - -
Dod07g0678 312 CDD SANT 69 112 IPR001005 -
Dod07g0678 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod07g0678 312 PANTHER MYB-RELATED PROTEIN ZM1 1 255 - -
Dod07g0678 312 MobiDBLite consensus disorder prediction 148 164 - -
Dod07g0678 312 CDD SANT 16 61 IPR001005 -
Dod07g0678 312 Gene3D - 68 136 - -
Dod07g0678 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod07g0678 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod07g0678 312 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod07g0678 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod07g0678 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod07g0678 312 SMART sant 13 63 IPR001005 -
Dod07g0678 312 SMART sant 66 114 IPR001005 -
Dod07g0678 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod07g0678 312 MobiDBLite consensus disorder prediction 148 171 - -
Dod07g0678 312 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0678 Dod-Chr7 9351791 9355842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0678 1 299 MYB Transcription Factor Family AT2G31180 45.819 3.46e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod07g0678 Myb_DNA-binding 9.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0678 K09422 - gmx:100775603 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0678 07 9351791 9355842 Dod07g0678 07 9351791 9355842 ECH
Dod07g0678 07 9351791 9355842 Dod01g2529 01 64429688 64431911 PCT